View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0355_low_13 (Length: 259)

Name: NF0355_low_13
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0355_low_13
NF0355_low_13
[»] chr5 (7 HSPs)
chr5 (124-248)||(22198935-22199059)
chr5 (19-131)||(17810378-17810499)
chr5 (174-218)||(31973134-31973178)
chr5 (175-214)||(15844510-15844549)
chr5 (175-218)||(30366688-30366731)
chr5 (175-213)||(32661593-32661631)
chr5 (181-214)||(38069577-38069610)
[»] chr1 (14 HSPs)
chr1 (131-248)||(21641361-21641477)
chr1 (169-213)||(17557702-17557746)
chr1 (175-218)||(19809943-19809986)
chr1 (175-218)||(19810683-19810726)
chr1 (175-218)||(19810996-19811039)
chr1 (176-214)||(10239511-10239549)
chr1 (172-215)||(13031123-13031166)
chr1 (183-218)||(19609178-19609213)
chr1 (180-215)||(40571606-40571641)
chr1 (181-215)||(347122-347156)
chr1 (174-214)||(347351-347391)
chr1 (175-215)||(7525066-7525106)
chr1 (171-218)||(29409945-29409993)
chr1 (175-215)||(41590214-41590254)
[»] chr6 (2 HSPs)
chr6 (19-131)||(20014553-20014665)
chr6 (175-213)||(7938938-7938976)
[»] chr7 (13 HSPs)
chr7 (19-89)||(21956416-21956486)
chr7 (175-218)||(39079926-39079969)
chr7 (175-218)||(14595866-14595909)
chr7 (175-215)||(16015394-16015434)
chr7 (175-218)||(38963368-38963411)
chr7 (172-218)||(1404836-1404882)
chr7 (181-215)||(21033611-21033645)
chr7 (172-214)||(39164707-39164749)
chr7 (175-212)||(14596178-14596215)
chr7 (175-212)||(16015706-16015743)
chr7 (180-217)||(27821113-27821150)
chr7 (172-208)||(1920245-1920281)
chr7 (184-216)||(36541840-36541872)
[»] chr4 (9 HSPs)
chr4 (175-218)||(17912817-17912860)
chr4 (181-216)||(50830708-50830743)
chr4 (175-215)||(46676697-46676737)
chr4 (175-214)||(24001542-24001581)
chr4 (175-218)||(30490939-30490982)
chr4 (175-220)||(22572429-22572475)
chr4 (181-218)||(3137471-3137508)
chr4 (179-215)||(50816715-50816752)
chr4 (181-217)||(49824632-49824668)
[»] chr2 (10 HSPs)
chr2 (171-217)||(33456038-33456084)
chr2 (181-214)||(3008439-3008472)
chr2 (175-218)||(5511787-5511830)
chr2 (174-205)||(13982118-13982149)
chr2 (174-215)||(11064261-11064303)
chr2 (173-218)||(22975518-22975563)
chr2 (174-211)||(26580055-26580092)
chr2 (171-215)||(5137484-5137528)
chr2 (175-215)||(7252250-7252290)
chr2 (172-216)||(11339672-11339715)
[»] chr8 (10 HSPs)
chr8 (175-218)||(45031151-45031195)
chr8 (175-216)||(10368683-10368724)
chr8 (175-218)||(6865201-6865245)
chr8 (174-218)||(26642663-26642707)
chr8 (175-214)||(14250623-14250662)
chr8 (183-218)||(45031369-45031404)
chr8 (174-220)||(294449-294495)
chr8 (175-216)||(30014156-30014197)
chr8 (181-218)||(30966073-30966110)
chr8 (181-218)||(34621963-34622000)
[»] chr3 (6 HSPs)
chr3 (174-217)||(39225009-39225052)
chr3 (175-214)||(31151832-31151871)
chr3 (175-214)||(54861605-54861644)
chr3 (175-217)||(43955324-43955366)
chr3 (175-216)||(1348875-1348916)
chr3 (177-217)||(45411897-45411937)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 22198935 - 22199059
Alignment:
Q  124 tgatatggtgtgtagcgattgtgtgaccagtgtccctgaactgtgactaactcttaaaatttgggttgggcctaactcaaccttacaaaaccggcctctt 223  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22198935 tgatttggtgtgtagcgattgtgtgaccagtgtccctgaactgtgactaactcttaaaatttgggttgggcctaactcaaccttacaaaaccggcctctt 22199034  T
Q  224 aagggcttttttgttggcaacagct 248  Q
    |||||||||||||||||||||||||    
T  22199035 aagggcttttttgttggcaacagct 22199059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 17810499 - 17810378
Alignment:
Q  19 taaagggaatgaggttgaagttgttgttaaggttttcgatgagatgcctgggatgggtttggttcctaatgaagt---------tgctgttttgggtggt 109  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||         | ||||||||||||||    
T  17810499 taaagggaatgaggttgaagttgctgttaaggttttggatgagatgcctgggatgggtttggttcctaatgtagttagttatactactgttttgggtggt 17810400  T
Q  110 tttgtttggaggggtgatatgg 131  Q
    ||||||||||||||||||||||    
T  17810399 tttgtttggaggggtgatatgg 17810378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 31973134 - 31973178
Alignment:
Q  174 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    |||||| |||||||||||||||||||| |||||||||||||||||    
T  31973134 ctcttagaatttgggttgggcctaactgaaccttacaaaaccggc 31973178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 15844510 - 15844549
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaac 214  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  15844510 tcttaaaatttgggttgggcctaactcaatcttacaaaac 15844549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 30366731 - 30366688
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||    
T  30366731 tcttagaatttggtttgggcctaactcaaccttacaaagccggc 30366688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 32661631 - 32661593
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaa 213  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  32661631 tcttagaatttgggttgggcctaactcaatcttacaaaa 32661593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 38069577 - 38069610
Alignment:
Q  181 aatttgggttgggcctaactcaaccttacaaaac 214  Q
    |||||||||||||||||||||||||||| |||||    
T  38069577 aatttgggttgggcctaactcaaccttataaaac 38069610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 21641361 - 21641477
Alignment:
Q  131 gtgtgtagcgattgtgtgaccagtgtccctgaactgtgactaactcttaaaatttgggttgggcctaactcaaccttacaaaaccggcctcttaagggct 230  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21641361 gtgtgtagcgattgtgtgaccagtgtccctgatctgtgactaactcttaaaatttgggttgggcctaactcaaccttacaaaaccggcctc-taagggct 21641459  T
Q  231 tttttgttggcaacagct 248  Q
    ||||||||||||||||||    
T  21641460 tttttgttggcaacagct 21641477  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 17557702 - 17557746
Alignment:
Q  169 actaactcttaaaatttgggttgggcctaactcaaccttacaaaa 213  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  17557702 actaattcttagaatttgggttgggcctaactcaaccttacaaaa 17557746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 19809943 - 19809986
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  19809943 tcttaaattttgggttgggcctaactcaaccttacaaaatcggc 19809986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 19810683 - 19810726
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  19810683 tcttaaaatttgggttgggcctagctcaaccttacaaaatcggc 19810726  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 19810996 - 19811039
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    |||||||||||||||| ||||||| |||||||||||||||||||    
T  19810996 tcttaaaatttgggttcggcctaagtcaaccttacaaaaccggc 19811039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 10239549 - 10239511
Alignment:
Q  176 cttaaaatttgggttgggcctaactcaaccttacaaaac 214  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  10239549 cttaaaacttgggttgggcctaactcaaccttacaaaac 10239511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 13031123 - 13031166
Alignment:
Q  172 aactcttaaaatttgggttgggcctaactcaaccttacaaaacc 215  Q
    |||||||| |||||||||||| |||||||||||| |||||||||    
T  13031123 aactcttagaatttgggttggacctaactcaaccctacaaaacc 13031166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 19609178 - 19609213
Alignment:
Q  183 tttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||||||| ||||||||||||||||||||||||||    
T  19609178 tttgggttgagcctaactcaaccttacaaaaccggc 19609213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 40571641 - 40571606
Alignment:
Q  180 aaatttgggttgggcctaactcaaccttacaaaacc 215  Q
    |||||||| |||||||||||||||||||||||||||    
T  40571641 aaatttggattgggcctaactcaaccttacaaaacc 40571606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 347156 - 347122
Alignment:
Q  181 aatttgggttgggcctaactcaaccttacaaaacc 215  Q
    |||||||||||| ||||||||||||||||||||||    
T  347156 aatttgggttggccctaactcaaccttacaaaacc 347122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 347391 - 347351
Alignment:
Q  174 ctcttaaaatttgggttgggcctaactcaaccttacaaaac 214  Q
    |||||| |||||||||||  |||||||||||||||||||||    
T  347391 ctcttagaatttgggttgaacctaactcaaccttacaaaac 347351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 7525106 - 7525066
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 215  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  7525106 tcttagaatttggattgagcctaactcaaccttacaaaacc 7525066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 29409945 - 29409993
Alignment:
Q  171 taactcttaaaatttgggttgggcctaactcaa-ccttacaaaaccggc 218  Q
    ||||||||| ||||| || |||||||||||||| |||||||||||||||    
T  29409945 taactcttagaatttagggtgggcctaactcaacccttacaaaaccggc 29409993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 41590214 - 41590254
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 215  Q
    ||||| ||||| ||||||||| |||||||||||||||||||    
T  41590214 tcttagaatttaggttgggccaaactcaaccttacaaaacc 41590254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 20014553 - 20014665
Alignment:
Q  19 taaagggaatgaggttgaagttgttgttaaggttttcgatgagatgcctgggatgggtttggttcctaatgaagttgctgttttgggtggttttgtttgg 118  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||    
T  20014553 taaagggaatgaggttgaagttgttgttaaggttttggatgagatgcctgagatgggtttggtttctaatgaagttgttgttttgggtcgttttgtttgg 20014652  T
Q  119 aggggtgatatgg 131  Q
    |||||||||||||    
T  20014653 aggggtgatatgg 20014665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 7938938 - 7938976
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaa 213  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  7938938 tcttaaaatttgggtttggcctaactcaaccctacaaaa 7938976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 21956416 - 21956486
Alignment:
Q  19 taaagggaatgaggttgaagttgttgttaaggttttcgatgagatgcctgggatgggtttggttcctaatg 89  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  21956416 taaagggaatgaggttgaagttgctgttaaggttttggatgagatgcctgggatgggtttggttcctaatg 21956486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 39079926 - 39079969
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  39079926 tcttaaaatttgggttgggcctaactaaaccttacaaaaccggc 39079969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 14595866 - 14595909
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  14595866 tcttaaaatttggattggacctaactcaaccttacaaaaccggc 14595909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 16015394 - 16015434
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 215  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  16015394 tcttaaaatttggattggacctaactcaaccttacaaaacc 16015434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 38963368 - 38963411
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  38963368 tcttagaatttgggttgagcctaactcaaccttaccaaaccggc 38963411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 1404882 - 1404836
Alignment:
Q  172 aactcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    |||||||||||||||||||| |||||||| |||| ||||||| ||||    
T  1404882 aactcttaaaatttgggttgagcctaacttaaccatacaaaatcggc 1404836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 21033611 - 21033645
Alignment:
Q  181 aatttgggttgggcctaactcaaccttacaaaacc 215  Q
    ||||||| |||||||||||||||||||||||||||    
T  21033611 aatttggattgggcctaactcaaccttacaaaacc 21033645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 39164749 - 39164707
Alignment:
Q  172 aactcttaaaatttgggttgggcctaactcaaccttacaaaac 214  Q
    ||||| || |||||||||||||||||||||||||||| |||||    
T  39164749 aactcctagaatttgggttgggcctaactcaaccttataaaac 39164707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 14596178 - 14596215
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaa 212  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  14596178 tcttaaaattttgattgggcctaactcaaccttacaaa 14596215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 16015706 - 16015743
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaa 212  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  16015706 tcttaaaattttgattgggcctaactcaaccttacaaa 16015743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 27821150 - 27821113
Alignment:
Q  180 aaatttgggttgggcctaactcaaccttacaaaaccgg 217  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  27821150 aaatttgggttggacctaactcaaccttaaaaaaccgg 27821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 1920281 - 1920245
Alignment:
Q  172 aactcttaaaatttgggttgggcctaactcaacctta 208  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  1920281 aactcttagaattttggttgggcctaactcaacctta 1920245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 36541840 - 36541872
Alignment:
Q  184 ttgggttgggcctaactcaaccttacaaaaccg 216  Q
    ||||||||||||||||| |||||||||||||||    
T  36541840 ttgggttgggcctaactaaaccttacaaaaccg 36541872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 17912860 - 17912817
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  17912860 tcttaaaatttgggttgggcctaactcaaccctacaaaaccggc 17912817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 50830708 - 50830743
Alignment:
Q  181 aatttgggttgggcctaactcaaccttacaaaaccg 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  50830708 aatttgggttgggcctaactcaaccttacaaaaccg 50830743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 46676737 - 46676697
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 215  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  46676737 tcttaaaatttgggttggacctaactcaaccctacaaaacc 46676697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 24001581 - 24001542
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaac 214  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  24001581 tcttagaatttgggttgggcttaactcaaccttacaaaac 24001542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 30490939 - 30490982
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  30490939 tcttagaatttgggttgggcctaactcaaccttacgaaaacggc 30490982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 22572475 - 22572429
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaac-cttacaaaaccggcct 220  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  22572475 tcttaaattttgggttggtcctaactcaactcttacaaaaccggcct 22572429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 3137471 - 3137508
Alignment:
Q  181 aatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  3137471 aatttgggttgggcctaaatcaaccttaaaaaaccggc 3137508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 50816715 - 50816752
Alignment:
Q  179 aaaatttgggttgggcctaactcaacc-ttacaaaacc 215  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  50816715 aaaatttgggttgggcctaactcaaccattacaaaacc 50816752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 49824668 - 49824632
Alignment:
Q  181 aatttgggttgggcctaactcaaccttacaaaaccgg 217  Q
    |||||||||| |||||||||||||| |||||||||||    
T  49824668 aatttgggtttggcctaactcaaccctacaaaaccgg 49824632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 33456084 - 33456038
Alignment:
Q  171 taactcttaaaatttgggttgggcctaactcaaccttacaaaaccgg 217  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  33456084 taactattagaatttgggttgggcctaactcaaccttacaaaaccgg 33456038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 3008472 - 3008439
Alignment:
Q  181 aatttgggttgggcctaactcaaccttacaaaac 214  Q
    ||||||||||||||||||||||||||||||||||    
T  3008472 aatttgggttgggcctaactcaaccttacaaaac 3008439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 5511787 - 5511830
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||| |||||||||||||||||||||||||||  |||||||||    
T  5511787 tcttagaatttgggttgggcctaactcaaccttctaaaaccggc 5511830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 205
Target Start/End: Original strand, 13982118 - 13982149
Alignment:
Q  174 ctcttaaaatttgggttgggcctaactcaacc 205  Q
    ||||||||||||||||||||||||||||||||    
T  13982118 ctcttaaaatttgggttgggcctaactcaacc 13982149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 11064261 - 11064303
Alignment:
Q  174 ctcttaaaatttgggttgggcctaactcaac-cttacaaaacc 215  Q
    |||||| |||||||||||||||||||||||| |||||||||||    
T  11064261 ctcttagaatttgggttgggcctaactcaactcttacaaaacc 11064303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 22975518 - 22975563
Alignment:
Q  173 actcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||||||| |||||||||||| ||||||| || ||||||||||||    
T  22975518 actcttaaattttgggttgggcttaactcagccctacaaaaccggc 22975563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 26580055 - 26580092
Alignment:
Q  174 ctcttaaaatttgggttgggcctaactcaaccttacaa 211  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  26580055 ctcttagaatttgggttgggcctaattcaaccttacaa 26580092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 5137528 - 5137484
Alignment:
Q  171 taactcttaaaatttgggttgggcctaactcaaccttacaaaacc 215  Q
    ||||||||| |||||||||||| || ||||||||| |||||||||    
T  5137528 taactcttagaatttgggttggaccaaactcaaccgtacaaaacc 5137484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 7252290 - 7252250
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 215  Q
    ||||| ||||||||||| ||||||||||||| |||||||||    
T  7252290 tcttagaatttgggttgagcctaactcaaccctacaaaacc 7252250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 11339672 - 11339715
Alignment:
Q  172 aactcttaaaatttgggttgggcctaactcaaccttacaaaaccg 216  Q
    |||||||| |||||||||||||||||||| || ||||||||||||    
T  11339672 aactcttagaatttgggttgggcctaact-aaacttacaaaaccg 11339715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 45031151 - 45031195
Alignment:
Q  175 tcttaaaattt-gggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  45031151 tcttaaaattttgggttgggcctaactcaaccttacaaaaccggc 45031195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 10368724 - 10368683
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccg 216  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  10368724 tcttaaaatttgggttgggactaactcaaccctacaaaaccg 10368683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 6865201 - 6865245
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaa-ccttacaaaaccggc 218  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  6865201 tcttaaaatttgggttgggcttaactcaacccttacaaaaccggc 6865245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 26642707 - 26642663
Alignment:
Q  174 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    |||||| |||||||||||||||||| |||||||||| ||||||||    
T  26642707 ctcttagaatttgggttgggcctaaatcaaccttaccaaaccggc 26642663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 14250623 - 14250662
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaac 214  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  14250623 tcttaaaaattgggttgggtctaactcaaccttacaaaac 14250662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 45031369 - 45031404
Alignment:
Q  183 tttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    ||||||||||||||||| ||||||||||||||||||    
T  45031369 tttgggttgggcctaacacaaccttacaaaaccggc 45031404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 294495 - 294449
Alignment:
Q  174 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggcct 220  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||||    
T  294495 ctcttaaaatttgggttggacctaactcaatcctacaaaatcggcct 294449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 30014156 - 30014197
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccg 216  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||    
T  30014156 tcttaaaatttaggttgggtctaactcaaccctacaaaaccg 30014197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 30966073 - 30966110
Alignment:
Q  181 aatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    |||||||||||||||||||||||  |||||||||||||    
T  30966073 aatttgggttgggcctaactcaaatttacaaaaccggc 30966110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 34622000 - 34621963
Alignment:
Q  181 aatttgggttgggcctaactcaaccttacaaaaccggc 218  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  34622000 aatttgggttgggcctaactcagccttacaacaccggc 34621963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 39225009 - 39225052
Alignment:
Q  174 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccgg 217  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  39225009 ctcttagaatttgggttgggcctaactcaaccttacaagaccgg 39225052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 31151871 - 31151832
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaac 214  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  31151871 tcttagaatatgggttgggcctaactcaaccttacaaaac 31151832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 54861644 - 54861605
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaac 214  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  54861644 tcttaaaatttgggttgggcgtaactcaacctaacaaaac 54861605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 43955324 - 43955366
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccgg 217  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||    
T  43955324 tcttagaatttgggttgagcctaactcaaccttataaaaccgg 43955366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 1348875 - 1348916
Alignment:
Q  175 tcttaaaatttgggttgggcctaactcaaccttacaaaaccg 216  Q
    ||||||||||||||||| | ||||||||||| ||||||||||    
T  1348875 tcttaaaatttgggttgagtctaactcaaccatacaaaaccg 1348916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 45411897 - 45411937
Alignment:
Q  177 ttaaaatttgggttgggcctaactcaaccttacaaaaccgg 217  Q
    |||||||||||||||| ||||||||||| ||||| ||||||    
T  45411897 ttaaaatttgggttggacctaactcaactttacacaaccgg 45411937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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