View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0355_low_15 (Length: 228)

Name: NF0355_low_15
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0355_low_15
NF0355_low_15
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-146)||(2978-3123)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-108)||(12534-12641)
[»] chr2 (14 HSPs)
chr2 (1-146)||(26583092-26583237)
chr2 (1-139)||(23062989-23063127)
chr2 (3-140)||(24660884-24661021)
chr2 (4-129)||(26884514-26884639)
chr2 (77-138)||(5706698-5706759)
chr2 (44-146)||(25181506-25181606)
chr2 (68-146)||(29281368-29281446)
chr2 (68-140)||(21907750-21907822)
chr2 (72-138)||(23878325-23878391)
chr2 (68-138)||(23089636-23089706)
chr2 (68-140)||(27208322-27208394)
chr2 (68-140)||(27210657-27210729)
chr2 (3-108)||(23264419-23264524)
chr2 (77-146)||(9957-10026)
[»] chr7 (12 HSPs)
chr7 (1-146)||(13742955-13743097)
chr7 (29-146)||(12710511-12710627)
chr7 (30-143)||(13006706-13006818)
chr7 (29-146)||(13123582-13123698)
chr7 (1-139)||(46625265-46625403)
chr7 (3-139)||(13678770-13678906)
chr7 (1-138)||(16676629-16676766)
chr7 (1-138)||(17650865-17651002)
chr7 (79-138)||(12591318-12591377)
chr7 (68-140)||(14320243-14320315)
chr7 (45-138)||(11383462-11383554)
chr7 (68-146)||(16090457-16090535)
[»] chr6 (16 HSPs)
chr6 (1-146)||(29614814-29614956)
chr6 (30-143)||(12167637-12167749)
chr6 (30-143)||(19286546-19286658)
chr6 (30-143)||(19877730-19877842)
chr6 (30-143)||(19786538-19786650)
chr6 (30-143)||(19883506-19883618)
chr6 (1-139)||(25396489-25396627)
chr6 (68-138)||(18799822-18799892)
chr6 (3-140)||(19471946-19472082)
chr6 (77-138)||(34640663-34640724)
chr6 (77-138)||(34647337-34647398)
chr6 (1-129)||(19300359-19300487)
chr6 (68-143)||(25470373-25470448)
chr6 (68-138)||(21565793-21565863)
chr6 (77-146)||(20008553-20008622)
chr6 (45-108)||(9186841-9186903)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-140)||(30205-30344)
[»] scaffold0456 (2 HSPs)
scaffold0456 (5-108)||(305-407)
scaffold0456 (5-108)||(7450-7552)
[»] scaffold1773 (1 HSPs)
scaffold1773 (29-146)||(452-568)
[»] scaffold0138 (1 HSPs)
scaffold0138 (3-139)||(1125-1261)
[»] chr8 (5 HSPs)
chr8 (29-146)||(23865885-23866002)
chr8 (3-139)||(18613529-18613664)
chr8 (44-146)||(24321276-24321376)
chr8 (3-139)||(21931026-21931162)
chr8 (94-146)||(14057219-14057271)
[»] chr3 (7 HSPs)
chr3 (30-143)||(41455769-41455882)
chr3 (78-138)||(24192274-24192334)
chr3 (1-108)||(13302844-13302951)
chr3 (1-140)||(13324400-13324539)
chr3 (68-138)||(55499728-55499798)
chr3 (44-108)||(13313520-13313583)
chr3 (68-138)||(16802069-16802139)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-108)||(111178-111284)
[»] chr5 (6 HSPs)
chr5 (30-143)||(23527904-23528016)
chr5 (8-140)||(18408553-18408685)
chr5 (44-143)||(34829432-34829530)
chr5 (44-146)||(22460506-22460606)
chr5 (90-146)||(19236294-19236350)
chr5 (52-143)||(20781102-20781192)
[»] chr4 (8 HSPs)
chr4 (29-146)||(8046499-8046616)
chr4 (44-129)||(11847453-11847537)
chr4 (78-139)||(14486052-14486113)
chr4 (77-138)||(53483022-53483083)
chr4 (47-139)||(15244566-15244658)
chr4 (44-107)||(27905613-27905675)
chr4 (68-146)||(16147436-16147514)
chr4 (47-139)||(15307471-15307563)
[»] chr1 (8 HSPs)
chr1 (30-143)||(41111214-41111326)
chr1 (45-140)||(18712098-18712193)
chr1 (44-146)||(20851738-20851838)
chr1 (44-146)||(21705625-21705725)
chr1 (44-146)||(21710167-21710268)
chr1 (44-129)||(19961538-19961622)
chr1 (77-146)||(20858365-20858434)
chr1 (1-108)||(11157447-11157554)
[»] scaffold0117 (1 HSPs)
scaffold0117 (30-146)||(9243-9358)
[»] scaffold0053 (2 HSPs)
scaffold0053 (1-139)||(81826-81964)
scaffold0053 (68-146)||(80096-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (3-140)||(129247-129385)
scaffold0004 (3-139)||(116173-116309)
[»] scaffold0461 (2 HSPs)
scaffold0461 (45-140)||(658-752)
scaffold0461 (45-129)||(7605-7688)
[»] scaffold0090 (1 HSPs)
scaffold0090 (21-140)||(17492-17611)
[»] scaffold0028 (1 HSPs)
scaffold0028 (4-139)||(65413-65548)
[»] scaffold0317 (1 HSPs)
scaffold0317 (3-139)||(663-799)
[»] scaffold0222 (1 HSPs)
scaffold0222 (8-140)||(16083-16215)
[»] scaffold0085 (1 HSPs)
scaffold0085 (44-146)||(4277-4377)
[»] scaffold0031 (2 HSPs)
scaffold0031 (3-139)||(121208-121344)
scaffold0031 (3-139)||(132085-132221)
[»] scaffold0232 (1 HSPs)
scaffold0232 (3-102)||(19059-19158)
[»] scaffold0025 (1 HSPs)
scaffold0025 (78-138)||(15061-15121)
[»] scaffold1061 (1 HSPs)
scaffold1061 (7-108)||(1712-1813)
[»] scaffold0261 (1 HSPs)
scaffold0261 (44-143)||(24178-24276)
[»] scaffold0476 (1 HSPs)
scaffold0476 (68-138)||(3905-3975)
[»] scaffold0094 (1 HSPs)
scaffold0094 (3-108)||(51552-51657)
[»] scaffold0001 (1 HSPs)
scaffold0001 (4-129)||(493650-493775)
[»] scaffold0124 (1 HSPs)
scaffold0124 (68-140)||(34938-35010)
[»] scaffold0034 (1 HSPs)
scaffold0034 (44-143)||(72631-72729)
[»] scaffold0247 (1 HSPs)
scaffold0247 (68-138)||(10683-10753)
[»] scaffold0720 (1 HSPs)
scaffold0720 (44-129)||(3882-3966)
[»] scaffold0483 (1 HSPs)
scaffold0483 (44-129)||(11631-11715)
[»] scaffold0206 (1 HSPs)
scaffold0206 (68-129)||(18060-18121)
[»] scaffold0235 (1 HSPs)
scaffold0235 (45-140)||(15539-15633)
[»] scaffold0453 (1 HSPs)
scaffold0453 (44-107)||(11196-11258)
[»] scaffold0139 (1 HSPs)
scaffold0139 (3-135)||(15604-15735)
[»] scaffold0310 (1 HSPs)
scaffold0310 (94-138)||(6907-6951)
[»] scaffold0169 (1 HSPs)
scaffold0169 (3-39)||(6307-6343)
[»] scaffold0023 (1 HSPs)
scaffold0023 (44-108)||(134820-134882)


Alignment Details
Target: scaffold0634 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 2978 - 3123
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2978 agggttatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaagaggctgactaaggctcacttcgct 3077  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||||||| | |||||| |||||||||||||||||||| |||||||    
T  3078 taagcgacggctagttcgcttaagcgaccggcttacagtaggtctg 3123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 12641 - 12534
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  12641 agggatatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaagaggctgactaaggctcacttcgct 12542  T
Q  101 taagcgac 108  Q
    ||||||||    
T  12541 taagcgac 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 26583092 - 26583237
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||  |||||||||||| || ||||||||    
T  26583092 agggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcctgcacgaaacaaaagttcagaagaaggctgactaagacttacttcgct 26583191  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||||||| | |||||| |||||||||||||||||||| |||||||    
T  26583192 taagcgacggctagttcgcttaagcgaccggcttacagtaggtctg 26583237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 23062989 - 23063127
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| ||||||||||||   |||||||    
T  23062989 agggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaaggtcaacttcgc 23063087  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||| | | |||| |||||||||||||||||||||    
T  23063088 ttaagcgacggctggttcgcttaagcgaccggcttacaga 23063127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 24660884 - 24661021
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | |||||| |||||||||| |||| ||||||||| ||||||||||| |   ||| ||||    
T  24660884 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagtaaaa-ttcaaaaagtggctgactaagaccttctttgctt 24660982  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||| | | | || ||||||||||||||| ||||||    
T  24660983 aagcgacggctggctcgcttaagcgaccggctcacagaa 24661021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 26884514 - 26884639
Alignment:
Q  4 gttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctta 102  Q
    |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| ||||||||||||||||||||| ||||||||    
T  26884514 gttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaagaggctgactaaggctcagttcgctta 26884612  T
Q  103 agcgacagatagttcacttaagcgacc 129  Q
    |||||  | ||| || |||||||||||    
T  26884613 agcgaagggtagctcgcttaagcgacc 26884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 5706759 - 5706698
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  5706759 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacag 5706698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 25181606 - 25181506
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||||||||||||| | |||| ||| |||||||||||  |||| |||||||||||||| | |||||  ||||||||||| |||||||| ||||    
T  25181606 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacactcagttcgcttaagcgacggctagtttgcttaagcgaccagcttacagtaggt 25181509  T
Q  144 ctg 146  Q
    |||    
T  25181508 ctg 25181506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 29281368 - 29281446
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||    
T  29281368 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctg 29281446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 21907750 - 21907822
Alignment:
Q  68 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| ||||||||||||||||||||||    
T  21907750 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaa 21907822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 23878325 - 23878391
Alignment:
Q  72 aaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||| |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||||||||||||    
T  23878325 aaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacag 23878391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 23089706 - 23089636
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| ||||||||||||   ||||||||||||||||    ||||| ||||||||||||||||||||    
T  23089706 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccggcttacag 23089636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 27208394 - 27208322
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27208394 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 27210729 - 27210657
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27210729 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 23264419 - 23264524
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    ||||||||||||| || | ||||||| | ||||||||| | | |||||| |||||||| || ||| ||||||||| |||||||||||| ||| |||||||    
T  23264419 ggttatacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggc-aaagttcaaaaagtggctgactaagg-tcatcttcgct 23264516  T
Q  101 taagcgac 108  Q
    ||||||||    
T  23264517 taagcgac 23264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 9957 - 10026
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||||| ||||  |||| || ||||||||||| | |||||| ||||||||||| |||||||| |||||||    
T  9957 aggctgtctaacactcagtttgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctg 10026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 13742955 - 13743097
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||   |||||||||||||||||||||||    
T  13742955 agggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcatgcacgaaacaaaagttcagaa---ggctgactaaggctcacttcgct 13743051  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||||||| | |||||| ||||||||||||||||| || |||||||    
T  13743052 taagcgacggctagttcgcttaagcgaccggcttatagtaggtctg 13743097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 12710627 - 12710511
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || ||||||||||    
T  12710627 tagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgac 12710529  T
Q  129 cggcttacagaaggtctg 146  Q
    |  ||||||| |||||||    
T  12710528 caacttacagtaggtctg 12710511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 13006706 - 13006818
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  13006706 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 13006804  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  13006805 agcttacagtaggt 13006818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 13123698 - 13123582
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || ||||||||||    
T  13123698 tagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgac 13123600  T
Q  129 cggcttacagaaggtctg 146  Q
    |  ||||||| |||||||    
T  13123599 caacttacagtaggtctg 13123582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 46625265 - 46625403
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||| ||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||| ||||| |||||| || ||||||||||| |  |||||||    
T  46625265 agggtcatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaaacaaaa-ttcaaagagtggctgactaagacctacttcgc 46625363  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||| | | | || ||||||||||| |||||||||    
T  46625364 ttaagcgacggctggctcgcttaagcgacctgcttacaga 46625403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 13678770 - 13678906
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |||||||||||| ||| |||||||    
T  13678770 ggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgct 13678867  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||||||| | | |||| |||||||||||||||||||||    
T  13678868 taagcgacggctggttcgcttaagcgaccggcttacaga 13678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 16676629 - 16676766
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |||||||    
T  16676629 agggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaacttcgc 16676727  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    |||||||||   |||||| ||||||||||||||||||||    
T  16676728 ttaagcgacgactagttcgcttaagcgaccggcttacag 16676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17650865 - 17651002
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |||||||    
T  17650865 agggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaacttcgc 17650963  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    |||||||||   |||||| ||||||||||||||||||||    
T  17650964 ttaagcgacgactagttcgcttaagcgaccggcttacag 17651002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 12591377 - 12591318
Alignment:
Q  79 gctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacag 12591318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 14320315 - 14320243
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||||||| ||||||    
T  14320315 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccggctcacagaa 14320243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 11383554 - 11383462
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||| |||| ||||    
T  11383554 tcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgacaggctcacag 11383462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 16090457 - 16090535
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||    
T  16090457 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctg 16090535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 29614956 - 29614814
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||| |||| ||   |||||||||||||||||||||||    
T  29614956 agggttatactagttaaaggaaatattatagaatgctcaagaagttccctcatgcacgaaacaaaagttcagaa---ggctgactaaggctcacttcgct 29614860  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||||||| | |||||| |||||||||||| ||||||| |||||||    
T  29614859 taagcgacggctagttcgcttaagcgaccgacttacagtaggtctg 29614814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 12167637 - 12167749
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  12167637 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 12167735  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  12167736 agcttacagtaggt 12167749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 19286546 - 19286658
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19286546 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19286644  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  19286645 agcttacagtaggt 19286658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 19877730 - 19877842
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19877730 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19877828  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  19877829 agcttacagtaggt 19877842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 19786650 - 19786538
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||  |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19786650 agaacgctcaagaagtcccctcatgcattaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19786552  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  19786551 agcttacagtaggt 19786538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 19883506 - 19883618
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||| | ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19883506 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctaattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19883604  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  19883605 agcttacagtaggt 19883618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 25396489 - 25396627
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| || ||||||||||||||||||||| | | | |||| |||||| |||| | ||||||||||| || |||||||| |  |||||||    
T  25396489 agggttatacaagttgaaagaaacattttagaatgctcaaaaggattccctagtgcactaagc-ataattcaaaaagtggttgactaagacctacttcgc 25396587  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||| | | | || |||||||||||| ||||||||    
T  25396588 ttaagcgacggctggctcgcttaagcgaccgacttacaga 25396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 18799822 - 18799892
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| |||||||||||| | |||||||||||||||| | |||||| ||||||||||||||||||||    
T  18799822 ttcaaaaagtggctgactaaggttgacttcgcttaagcgacggctagttcgcttaagcgaccggcttacag 18799892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 19472082 - 19471946
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| |||||||||||| | ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||| ||| |   ||||||||    
T  19472082 ggttatacaagttgaaggaaacatttcaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgac-aagaccttcttcgctt 19471985  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||  | | | || ||||||||||||||| ||||||    
T  19471984 aagcgatggctggctcgcttaagcgaccggctcacagaa 19471946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 34640724 - 34640663
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  34640724 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacag 34640663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 34647398 - 34647337
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  34647398 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacag 34647337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 19300487 - 19300359
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||| |||| |||||| || | ||| ||||| | | |||||| ||||||||||||||  |||| | |||||||||||||||||||  ||||    
T  19300487 agggttatacaagctaaaagaaacacttaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatagaggctgactaaggctcatctcgc 19300389  T
Q  100 ttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||||  | ||| || |||||||||||    
T  19300388 ttaagcgaagggtagctcgcttaagcgacc 19300359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 25470448 - 25470373
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    |||| ||| ||||||||||||| ||||||||||||||||||   |||||| |||||||||||  ||||||| ||||    
T  25470448 ttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggt 25470373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 21565863 - 21565793
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| ||||||||||||   ||||||||||||||||    ||||| ||||||||||||||||||||    
T  21565863 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccggcttacag 21565793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 20008622 - 20008553
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||||| ||||  |||| ||||||||||| || | |||||| ||||||||||| |||||||| |||||||    
T  20008622 aggctgtctaacactcagttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtctg 20008553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 9186841 - 9186903
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgac 108  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||| ||| |||||||||||||||    
T  9186841 tcccctagtgcacgaagcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgac 9186903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 30205 - 30344
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| || ||||||||||||||||||||| | | |||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  30205 agggttatacaagttgaaagaaacattttagaatgctcaaaagggtcccctagtgcacgaagcaaaa-ttcagaaagtggctgactaaggctcacttcgc 30303  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||||  | | | || ||||||||||||||||||||||    
T  30304 ttaagcgaaggttggctcgcttaagcgaccggcttacagaa 30344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 305 - 407
Alignment:
Q  5 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 104  Q
    ||||||||||| || |||| |||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  305 ttatacaagttgaaagaaatattttagaatgctcaagatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaag 403  T
Q  105 cgac 108  Q
    ||||    
T  404 cgac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 7450 - 7552
Alignment:
Q  5 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 104  Q
    ||||||||||| || |||| |||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  7450 ttatacaagttgaaagaaatattttagaatgctcaagatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaag 7548  T
Q  105 cgac 108  Q
    ||||    
T  7549 cgac 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 452 - 568
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | |||||| ||||||||||    
T  452 tagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagttcgcttaagcgac 550  T
Q  129 cggcttacagaaggtctg 146  Q
    | |||||||| |||||||    
T  551 cagcttacagtaggtctg 568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 1125 - 1261
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| | | ||||||||    
T  1125 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccctcttcgctt 1223  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||| | | | || ||||||||||||||| |||||    
T  1224 aagcgacggctggctcgcttaagcgaccggctcacaga 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 23865885 - 23866002
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || ||||||||||    
T  23865885 tagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaaaaggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgac 23865984  T
Q  129 cggcttacagaaggtctg 146  Q
    |  ||||||| |||||||    
T  23865985 caacttacagtaggtctg 23866002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 18613529 - 18613664
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    ||||||||||||| || | ||||||||  ||||||||||| | |||||| |||||||| |||||  ||||||| | ||| |||||||| ||| |||||||    
T  18613529 ggttatacaagttgaaaggaacatttttaaatgctcaagaggatcccctagtgcacgaggcaaag-ttcaaaa-gtggccgactaagg-tcatcttcgct 18613625  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||||||| | | |||| ||||||||||| |||||||||    
T  18613626 taagcgacggctggttcgcttaagcgacctgcttacaga 18613664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 24321376 - 24321276
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  24321376 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 24321279  T
Q  144 ctg 146  Q
    |||    
T  24321278 ctg 24321276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 21931026 - 21931162
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctga-ctaaggctcacttcgc 99  Q
    ||||||||||||| || ||||||||||||||||||| ||| |  | |||| ||| | |||||||||  |||||||| |||||| | |||||   ||||||    
T  21931026 ggttatacaagttgaaagaaacattttagaatgctc-agatggattccctagtggaggaagcaaaa--tcaaaaagtggctgaccaaaggccttcttcgc 21931122  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||  | | ||||||||||||||||| ||||||||    
T  21931123 ttaagcgaaggctggttcacttaagcgaccgacttacaga 21931162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 14057271 - 14057219
Alignment:
Q  94 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    ||||||||||||||| | ||| || ||||||||||||||| |||||| |||||    
T  14057271 cttcgcttaagcgacggctagctcgcttaagcgaccggctcacagaaagtctg 14057219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 41455882 - 41455769
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||| ||||||||||| ||||| |||||| | |||| ||| ||||||||||||| |||||||||||||||||| | |||||| |||||||||||    
T  41455882 agaacgctcaggaagtcccctcatgcactaagcaacagttcagaaaaaggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 41455783  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  41455782 agcttacagtaggt 41455769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 24192274 - 24192334
Alignment:
Q  78 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||  ||||||||||||||||| | |||||| ||||||||||||||||||||    
T  24192274 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacag 24192334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13302951 - 13302844
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||| ||||||||||||||||  ||||    
T  13302951 agggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaagtggctgactaaggctcagctcgc 13302853  T
Q  100 ttaagcgac 108  Q
    |||||||||    
T  13302852 ttaagcgac 13302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 13324539 - 13324400
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||| ||||||||||||||||  ||||    
T  13324539 agggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaagtggctgactaaggctcagctcgc 13324441  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||||  | | | || |||||||||| ||||| |||||    
T  13324440 ttaagcgaaggctggctcgcttaagcgactggcttgcagaa 13324400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 55499798 - 55499728
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| |||||||||||    ||||||||||||||||   |||||| ||||||||||||||||||||    
T  55499798 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacag 55499728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 13313583 - 13313520
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 108  Q
    |||||||  |||||||||||||| |||| |||| ||||||||||||||||  |||||||||||||    
T  13313583 gtcccctaatgcacgaagcaaaa-ttcagaaagtggctgactaaggctcagctcgcttaagcgac 13313520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 16802139 - 16802069
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| |||| |||||||   ||||||||||| |||| | ||| || ||||||||||||||||||||    
T  16802139 ttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccggcttacag 16802069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 111178 - 111284
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||||||||| |||||||||| | ||| ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| |||||||||||    
T  111178 agggttatactagttaaaggagaaattatagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgct 111276  T
Q  101 taagcgac 108  Q
    ||||||||    
T  111277 taagcgac 111284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 23527904 - 23528016
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  23527904 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 23528002  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  23528003 agcttacagtaggt 23528016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 18408685 - 18408553
Alignment:
Q  8 tacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcactt-cgcttaagc 105  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| || |||||||||    
T  18408685 tacaagttgaaaggaacatttaaaaatgctcaaaagaatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcattttcgcttaagc 18408588  T
Q  106 gacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||| | |||||  ||||||||||||||||||||||    
T  18408587 gacggctagtttgcttaagcgaccggcttacagaa 18408553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 34829432 - 34829530
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||||||||||||||  |||| ||| ||| ||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||| |||||    
T  34829432 gtcccctagtgcacgaagcaaag-ttcagaaaaaggttgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggt 34829530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 22460506 - 22460606
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  22460506 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 22460603  T
Q  144 ctg 146  Q
    |||    
T  22460604 ctg 22460606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 19236294 - 19236350
Alignment:
Q  90 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||    
T  19236294 ctcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctg 19236350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 20781102 - 20781192
Alignment:
Q  52 gtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||||||||||| |||| ||| |||||||||||  || | |||||||||||||| | ||| || ||||||||||| ||| ||| |||||    
T  20781102 gtgcacgaagcaaaa-ttcagaaaaaggctgactaacacttagttcgcttaagcgacgggtagctcgcttaagcgaccagctcacacaaggt 20781192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 8046616 - 8046499
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| ||||||||||||||||||||||||||||||||   ||| || ||||||||||    
T  8046616 tagaatgctcaagaagtcccctcatgcactaagtaacagttcagaaaaaggctgactaaggctcacttcgcttaagcgacgtctagctcgcttaagcgac 8046517  T
Q  129 cggcttacagaaggtctg 146  Q
    |  |||| || |||||||    
T  8046516 caacttatagtaggtctg 8046499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 11847453 - 11847537
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||| |||||| |||||||  |||| |||||||||||||||||||||  ||||||||||||| | |||||| |||||||||||    
T  11847453 gtcccctagtgcacaaagcaaag-ttcagaaagaggctgactaaggctcagctcgcttaagcgacgggtagttcgcttaagcgacc 11847537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 14486052 - 14486113
Alignment:
Q  78 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||||||||||||||||||||||||  | | | || |||||||||||||||||||||    
T  14486052 ggctgactaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacaga 14486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 53483022 - 53483083
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||| |||||||||||||||||| |  ||||| ||||||||||| ||||||||    
T  53483022 aggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacag 53483083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 15244566 - 15244658
Alignment:
Q  47 ccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| |   ||||| ||||||||| | |   || |||||||||||||||||||||    
T  15244566 ccctagtgcacgaagcaaaatttcaaaaagtggctgactaagaccttcttcgattaagcgacggttgactcgcttaagcgaccggcttacaga 15244658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 27905613 - 27905675
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcga 107  Q
    |||||||  ||||||||||||||||||| |||| |||||||| |||||||  ||||||||||||    
T  27905613 gtcccctaatgcacgaagcaaaaattcagaaagtggctgact-aggctcagctcgcttaagcga 27905675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 16147514 - 16147436
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||    
T  16147514 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctg 16147436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 15307471 - 15307563
Alignment:
Q  47 ccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||| ||||||||||||||  ||| ||||| ||||||||||| |   ||||||||||||||  | | | || |||||||||||| ||||||||    
T  15307471 ccctagtgcacgaagcaaagtttcgaaaagtggctgactaagaccttcttcgcttaagcgatggctggctcgcttaagcgaccgacttacaga 15307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 41111214 - 41111326
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  41111214 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 41111312  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  41111313 agcttacagtaggt 41111326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 18712098 - 18712193
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||||| |||||||| |||||| ||||||| | |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||| ||||||||||    
T  18712098 tcccctagtgcacgaggcaaaagttcaaaaggtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccagcttacagaa 18712193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 20851838 - 20851738
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  20851838 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 20851741  T
Q  144 ctg 146  Q
    |||    
T  20851740 ctg 20851738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 21705625 - 21705725
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21705625 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21705722  T
Q  144 ctg 146  Q
    |||    
T  21705723 ctg 21705725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 21710167 - 21710268
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||  ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21710167 gtcccctagtgtacgaagcaaga-ttcggaaaaaggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21710265  T
Q  144 ctg 146  Q
    |||    
T  21710266 ctg 21710268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 19961538 - 19961622
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||| ||||||||||||||  |||| | |||||||||||||||||||  ||||||||||||  | ||| || |||||||||||    
T  19961538 gtcccctagtgcacgaagcaaag-ttcagatagaggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgacc 19961622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 20858434 - 20858365
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||    
T  20858434 aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctg 20858365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11157447 - 11157554
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 98  Q
    ||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| || ||| ||||||||| || ||||||||| ||| |||||    
T  11157447 agggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggc-aaagttcaaaaagtggttgactaagg-tcatcttcg 11157544  T
Q  99 cttaagcgac 108  Q
    ||||||||||    
T  11157545 cttaagcgac 11157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 9358 - 9243
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||||||||||||||||||||| ||||| ||| |||| || | ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||    
T  9358 agaatgctcaagaagtcccctcatgcactaagtaaaagtttagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgacc 9260  T
Q  130 ggcttacagaaggtctg 146  Q
      ||||||| |||||||    
T  9259 aacttacagtaggtctg 9243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 81964 - 81826
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| || ||||||||||| ||||||||| | | | |||| ||| ||||||||||| ||||||||| ||||||||||| |  |||||||    
T  81964 agggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctggtgtacgaagcaaaa-ttcaaaaagtggctgactaagacctacttcgc 81866  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||| | | | || |||||||||||| ||||||||    
T  81865 ttaagcgacggctggctcgcttaagcgaccgacttacaga 81826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 80174 - 80096
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctg 146  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||    
T  80174 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctg 80096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 129385 - 129247
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    ||||||||||||| |||||||||||| | || ||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| |   |||||||    
T  129385 ggttatacaagttgaaggaaacatttcaaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccttcttcgct 129287  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||||||| | | | || ||||||||||||||| ||||||    
T  129286 taagcgacggctggctcgcttaagcgaccggctcacagaa 129247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 116173 - 116309
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    ||||||||| ||| || ||||||||||| ||| ||||| | | |||||| |||||||| |||||  ||||||||  |||||||||||| ||| |||||||    
T  116173 ggttatacaggttgaaagaaacattttaaaatactcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaaatggctgactaagg-tcatcttcgct 116270  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||||||| | | |||| |||||||||||||||||||||    
T  116271 taagcgacggctggttcgcttaagcgaccggcttacaga 116309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 752 - 658
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||||||||||||||    
T  752 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagaa 658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 7688 - 7605
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||    
T  7688 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 17492 - 17611
Alignment:
Q  21 aaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcac 119  Q
    |||| ||||||||||||||| | | || ||| ||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||||||  | | | || |    
T  17492 aaaccttttagaatgctcaaaaggctcgcctagtgcacgaaacaaaa-ttcagaaagtggctgaccaaggctcacttcgcttaagcgaaggctggctcgc 17590  T
Q  120 ttaagcgaccggcttacagaa 140  Q
    |||||||||||||||||||||    
T  17591 ttaagcgaccggcttacagaa 17611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 65413 - 65548
Alignment:
Q  4 gttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctta 102  Q
    |||||||||||| || ||||||||||| |||| |||| | | |||||| |||||||| |||||| ||||||||| ||||||||||||    || ||||||    
T  65413 gttatacaagttgaaagaaacattttaaaatgttcaaaaggatcccctagtgcacgaggcaaaa-ttcaaaaagtggctgactaaggtcttctccgctta 65511  T
Q  103 agcgacagatagttcacttaagcgaccggcttacaga 139  Q
    || ||| | | |||| |||||||||||||||||||||    
T  65512 agtgacggctggttcgcttaagcgaccggcttacaga 65548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 663 - 799
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |||||||||||| ||| |||||||    
T  663 ggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgct 760  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||||||| | | |||| |||||||||||||||||||||    
T  761 taagcgacggctggttcgcttaagcgaccggcttacaga 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 16083 - 16215
Alignment:
Q  8 tacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagc 105  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||    
T  16083 tacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagc 16180  T
Q  106 gacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||| | ||| || ||||||||||||||||||||||    
T  16181 gacggttagctcgcttaagcgaccggcttacagaa 16215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 4377 - 4277
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| |||||||||||||  | |||||| ||||||||||| |||||||| ||||    
T  4377 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgatggctagttcgcttaagcgaccagcttacagtaggt 4280  T
Q  144 ctg 146  Q
    |||    
T  4279 ctg 4277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 121208 - 121344
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |   ||||||||    
T  121208 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagaccttcttcgctt 121306  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||  | | | || ||||||| |||||||||||||    
T  121307 aagcgaaggctggctcgcttaagcaaccggcttacaga 121344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 132085 - 132221
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |   ||||||||    
T  132085 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagaccttcttcgctt 132183  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||  | | | || ||||||| |||||||||||||    
T  132184 aagcgaaggctggctcgcttaagcaaccggcttacaga 132221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 19158 - 19059
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||| ||||| || ||||||||||| ||||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| | | ||||||||    
T  19158 ggttatataagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccctcttcgctt 19060  T

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Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 15121 - 15061
Alignment:
Q  78 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||  ||||||||||||||||| | |||||| ||||||||||||||||||||    
T  15121 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacag 15061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 1712 - 1813
Alignment:
Q  7 atacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaag 104  Q
    ||||||||| || ||||||||||| ||||||||| | | |||||| |||||||| || ||||||||||||| |||||||||||| ||| |||||||||||    
T  1712 atacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaggc-aaaattcaaaaagtggctgactaagg-tcatcttcgcttaag 1809  T
Q  105 cgac 108  Q
    ||||    
T  1810 cgac 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 24276 - 24178
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||||||||||||||  |||| |||||| ||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||| ||| |||||    
T  24276 gtcccctagtgcacgaagcaaag-ttcagaaagagactgactaaggctcatctcgcttaagcgaaggatagctcgcttaagcgaccagctcacaaaaggt 24178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 3975 - 3905
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| ||||||||||||   ||||||||||||||||   |||||| ||||||||||||||||||||    
T  3975 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacag 3905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 51552 - 51657
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| |||||| |||| ||||||||||||| ||||||||||| |   ||||||||    
T  51552 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacaaagc-aaaattcaaaaagtggctgactaagaccttcttcgctt 51650  T
Q  102 aagcgac 108  Q
    |||||||    
T  51651 aagcgac 51657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 493775 - 493650
Alignment:
Q  4 gttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctta 102  Q
    |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| ||| ||||||||||||||||| ||||||||    
T  493775 gttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaaaggctgactaaggctcagttcgctta 493677  T
Q  103 agcgacagatagttcacttaagcgacc 129  Q
    |||||  | ||| || |||||||||||    
T  493676 agcgaagggtagctcgcttaagcgacc 493650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 35010 - 34938
Alignment:
Q  68 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| ||||||||||||||||||||||    
T  35010 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaa 34938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 72631 - 72729
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    |||||||  ||||||||||||||||||| |||| |||||||| |||||||  ||||||||||||  | ||| || ||||||||||| ||| ||| |||||    
T  72631 gtcccctaatgcacgaagcaaaaattcagaaagtggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggt 72729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 10683 - 10753
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| |||||||||||    |||||||||||||||| | ||| || ||||||||||||||||||||    
T  10683 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacggctagctcgcttaagcgaccggcttacag 10753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 3966 - 3882
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||| |||||||||||||   |||||||| ||||||||||| ||||| |||||||||||||  | ||| || |||||||||||    
T  3966 gtcccctagtgcacgaagcaagg-ttcaaaaaaaggctgactaatgctcagttcgcttaagcgaagggtagctcgcttaagcgacc 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 11715 - 11631
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||| ||||| ||||||||  |||| | |||||||||||||||||||  ||||||||||||  | |||||| |||||||||||    
T  11715 gtcccctagtgcatgaagcaaag-ttcagatagaggctgactaaggctcagctcgcttaagcgaagggtagttcgcttaagcgacc 11631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 18060 - 18121
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||| ||||||||||||||||| ||||||||||||| || ||| || |||||||||||    
T  18060 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaaaggtagctcgcttaagcgacc 18121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 15633 - 15539
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||  | ||| ||||||||||||| |||| ||||||    
T  15633 tcccctagtgcacgaggcaaat-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagctcacttaagcgactggctcacagaa 15539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 11258 - 11196
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcga 107  Q
    ||||||| |||||||||||||   |||| ||| ||||||||||||||||| |||||||||||||    
T  11258 gtcccctagtgcacgaagcaagg-ttcagaaaaaggctgactaaggctcagttcgcttaagcga 11196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 15735 - 15604
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    ||||||||||||| || ||||||||||  ||||||||| | | || ||| |||||||| || ||| ||| ||||| |||||||||||| ||| |||||||    
T  15735 ggttatacaagttgaaagaaacatttttaaatgctcaaaaggatctcctagtgcacgaggc-aaagttc-aaaagtggctgactaagg-tcatcttcgct 15639  T
Q  101 taagcgacagatagttcacttaagcgaccggctta 135  Q
    |||||||| | | |||| |||||||||||| ||||    
T  15638 taagcgacggttggttcgcttaagcgaccgtctta 15604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 6907 - 6951
Alignment:
Q  94 cttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||||| | ||| || ||||||||||||||||||||    
T  6907 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacag 6951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 6307 - 6343
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctca 39  Q
    ||||||||||||| || ||||||||||||||||||||    
T  6307 ggttatacaagttgaaagaaacattttagaatgctca 6343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 134820 - 134882
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 108  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| ||||||||||||||    
T  134820 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgac 134882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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