View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0355_low_17 (Length: 211)
Name: NF0355_low_17
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0355_low_17
Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 54609036 - 54608918
Alignment:
Q
1
ctcaatatattaagtgacattcttttaatccacatttgatccccaaataaannnnnnngcttctttgcatatagaaacgggaataaaagaatcttcataa
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
T
54609036
ctcaatatattaagtgacattcttttaatccacatttgatccccaaataaattcctttgcttctttacatatagaaacgggaataaaagaatcttcttaa
54608937
T
Q
101
gtttaactcatttggtaag
119
Q
||||||||||||| |||||
T
54608936
gtttaactcatttagtaag
54608918
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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