View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0355_low_2 (Length: 615)
Name: NF0355_low_2
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0355_low_2
Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Original strand, 6147666 - 6148218
Alignment:
Q
17
ttgcctcgaaacttacttt----tgttaacggtattaagcaggtatcttgggttggtgttttttagcctattttgcttattannnnnnncaattgtttaa
112
Q
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
T
6147666
ttgcctcgaaacttactttcaattgttaacggtattaagcgggtatcttgggttggtgttttttagcctattttgcttattatttttttcaattgtttaa
6147765
T
Q
113
ggcctttataattggatttgaatgatagaaattcattccaaacatttttcttatttcaaccggacacattatttttcttgtttcgttaccatcaatatct
212
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
T
6147766
ggcctttataattggatttgaatgatagaaattcattccaaacatttttcttatttcaaccagacacattatttttcttgttttgttaccatcaatatct
6147865
T
Q
213
caaagatatatatattgtatctgaaccaacttcattcttattaaacctatatataaagatagggttgcaccaagttattcctacatgtattatgacttgt
312
Q
||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
T
6147866
caaagatat--atattgtatctgaaccaacttcgttcttattaaacctatatatgaagatagggttgcaccaagttattcctacatgtattatgacttgt
6147963
T
Q
313
ttccttttaccaaaagggctatgcaaatgcaatcatatagaaagtatgatatgcaaattttggtgaggcagcaagaatatttagcttaaaatccattcga
412
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
T
6147964
ttccttttaccaaaagggctatgcaaatgcaatcatatagaaagtatgatatgcaaattttggtgaggcagcaagaacatttagcttaaaatccattcga
6148063
T
Q
413
caaactagaataaactttgtataacaaagttacatatggattacgcttcagatatttaagggctttcaaataagcattttattatgacagttagtaaatc
512
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
6148064
caaactagaataaactttgtataacaaagttacatatggattacgcttcagatatttaagggctttcaaataagcattttattatgacagttagtaaata
6148163
T
Q
513
cataattgagatggataattcgttgatatatatagggaatttggattgcaagaaacaac
571
Q
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
T
6148164
cataattgagatggataattcgttgatatat----ggaatttggattgcaagaaacaac
6148218
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 184 - 571
Target Start/End: Original strand, 6128630 - 6129004
Alignment:
Q
184
tttttcttgtttcgttaccatcaatatctcaaagatatatatattgtatctgaaccaacttcattcttattaaacctatatataaagatagggttgcacc
283
Q
|||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||| |||| ||
T
6128630
tttttcttgttttgttaccatcaatatttcaaatatatatatattgtatctgaaccaacttcgttcttattaaacccttata--aaggtag--ttgctcc
6128725
T
Q
284
aagttattcctacatgtattatgacttgtttccttttaccaaaagggctatgcaaatgcaatcatatagaaagtatgatatgcaaattttggtgaggcag
383
Q
|||||||| |||| |||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| ||
T
6128726
aagttatttctacgtgtattatgacttgtttccttttaccaaaaagggtt-----atgcaatcatatagaaagtatgatatgcaaattttggtgaggtag
6128820
T
Q
384
caagaatatttagcttaaaatccattcgacaaactagaataaactttgtataacaaagttacatatggattacgcttcagatatttaagggctttcaaat
483
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
T
6128821
caagaatatttagcttaaaatccattcgacaaactagaataaactttgtataataaagttacatatggattacgcttcagatatttaagggcttttaaat
6128920
T
Q
484
aagcattttattatgacagttagtaaatccataattgagatggataattcgttgatatatatagggaatttggattgcaagaaacaac
571
Q
|||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||
T
6128921
aagccttttattatgacagttagtaaatacataattgagatggctaattcgttgatatat----ggaatatggattgcaagaaacaac
6129004
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 573
Target Start/End: Original strand, 6141582 - 6141965
Alignment:
Q
173
cggacacattatttttcttgtttcgttaccatcaatatctcaaagatatatatattgtatctgaaccaacttcattcttattaaacctatatataaagat
272
Q
|||||||||| ||| |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| || | ||| |
T
6141582
cggacacattgtttctcttgttttgttaccatcaatatctcatagatatatat--tgtatctgaaccaacttcgttcttattaaacccttaca--aaggt
6141677
T
Q
273
agggttgcaccaagttattcctacatgtattatgacttgtttccttttaccaaaagggctatgcaaatgcaatcatatagaaagtatgatatgcaaattt
372
Q
|| |||||| ||||||||||||| |||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
T
6141678
ag--ttgcac-aagttattcctacgtgtattatgagttgtttccttctaccaaaagagctatgc------aatcatatagaaagtatgatatgcaaattt
6141768
T
Q
373
tggtgaggcagcaagaatatttagcttaaaatccattcgacaaactagaataaactttgtataacaaagttacatatggattacgcttcagatatttaag
472
Q
| ||| ||||||||||||||||||||| ||||| |||||||||||| ||| || |||||||| ||||| ||||||||||||||||||||||| |||||||
T
6141769
ttgtggggcagcaagaatatttagcttgaaatctattcgacaaactggaaaaagctttgtatgacaaaattacatatggattacgcttcagaaatttaag
6141868
T
Q
473
ggctttcaaataagcattttattatgacagttagtaaatccataattgagatggataattcgttgatatatatagggaatttggattgcaagaaacaact
572
Q
|||||| || ||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||
T
6141869
ggcttttaattaagctttttattacgacagttagtaaatacataattgagatggctaattcgttgatatat----ggaattcggattgcaagaaagaact
6141964
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 9884713 - 9884671
Alignment:
Q
44
gtattaagcaggtatcttgggttggtgttttttagcctatttt
86
Q
||||||||||||| ||||||| | |||||||||||||||||||
T
9884713
gtattaagcaggtctcttgggctagtgttttttagcctatttt
9884671
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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