View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0355_low_3 (Length: 600)
Name: NF0355_low_3
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0355_low_3
Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Original strand, 46874784 - 46875315
Alignment:
Q
1
agaagctacttagcttttactttttcactgtgtacatgggtttgaaacgtgcatttggcctcgaagacgtcaaaccaaacatagcctaaattgatagagt
100
Q
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
T
46874784
agaagctacttagcttttactttttcactgtgta-atgggtttgaaacgtgcatttggcctcgaagacgtcaaaccaaacacagcctaaattgatagagt
46874882
T
Q
101
ttctttaattgaaggaactaatctgttattttacaaatttaaaagataaaaatacttgacttttacaattttgaggactaaaatgtcgatttacttnnnn
200
Q
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
46874883
ttctttaattgaaggaact-----gttattttacaaatttaaaagataaaaatacttgacttttacaattttgaggactaaaatgtcgatttacttaaaa
46874977
T
Q
201
nnntatgtgaacactctttcaggcaacttctaaagtataaactcttgcaagcccaatgtttgatataagctcctgccagcccaaatgatctttgatacgt
300
Q
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
46874978
aaatatgtgaacgctctttcagacaacttctaaagtataaactcttgcaagcccaatgtttgatataagctcctgccagcccaaatgatctttgatacgt
46875077
T
Q
301
aagagattactctatgcacccggtggattgctcaacctctgaaataaaccgattcaatatgctcctgtccaaaaacaacgactggatcgtagctcctgat
400
Q
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
46875078
aaaagattactctatgcacccggtggattgctcaacctctgaaataaaccgattcaatatgctcctgtccaaaaacaacgactggatcgtagctcctgat
46875177
T
Q
401
aggatttgcgcaatcgagagttacaatcagataaatatgaggggattttaagcaaattgaagggtctgcaaagcaaatctcatattggcaagaaaatcta
500
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
46875178
aggatttgcgcaatcgagagttacaatcagataaatatgaggggattttaagcaaattgaagggtctgcaaagcaaatctcatattggcaagaaaatcta
46875277
T
Q
501
atgtatcccatgagcaggagtaggatgtacctttgttt
538
Q
||||||||||||||||||||||||||||||||||||||
T
46875278
atgtatcccatgagcaggagtaggatgtacctttgttt
46875315
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 23895211 - 23895174
Alignment:
Q
310
ctctatgcacccggtggattgctcaacctctgaaataa
347
Q
|||||||||||| |||||||||||||||||||||||||
T
23895211
ctctatgcaccccgtggattgctcaacctctgaaataa
23895174
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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