View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0355_low_3 (Length: 600)
Name: NF0355_low_3
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0355_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Original strand, 46874784 - 46875315
Alignment:
| Q |
1 |
agaagctacttagcttttactttttcactgtgtacatgggtttgaaacgtgcatttggcctcgaagacgtcaaaccaaacatagcctaaattgatagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46874784 |
agaagctacttagcttttactttttcactgtgta-atgggtttgaaacgtgcatttggcctcgaagacgtcaaaccaaacacagcctaaattgatagagt |
46874882 |
T |
|
| Q |
101 |
ttctttaattgaaggaactaatctgttattttacaaatttaaaagataaaaatacttgacttttacaattttgaggactaaaatgtcgatttacttnnnn |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46874883 |
ttctttaattgaaggaact-----gttattttacaaatttaaaagataaaaatacttgacttttacaattttgaggactaaaatgtcgatttacttaaaa |
46874977 |
T |
|
| Q |
201 |
nnntatgtgaacactctttcaggcaacttctaaagtataaactcttgcaagcccaatgtttgatataagctcctgccagcccaaatgatctttgatacgt |
300 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46874978 |
aaatatgtgaacgctctttcagacaacttctaaagtataaactcttgcaagcccaatgtttgatataagctcctgccagcccaaatgatctttgatacgt |
46875077 |
T |
|
| Q |
301 |
aagagattactctatgcacccggtggattgctcaacctctgaaataaaccgattcaatatgctcctgtccaaaaacaacgactggatcgtagctcctgat |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46875078 |
aaaagattactctatgcacccggtggattgctcaacctctgaaataaaccgattcaatatgctcctgtccaaaaacaacgactggatcgtagctcctgat |
46875177 |
T |
|
| Q |
401 |
aggatttgcgcaatcgagagttacaatcagataaatatgaggggattttaagcaaattgaagggtctgcaaagcaaatctcatattggcaagaaaatcta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46875178 |
aggatttgcgcaatcgagagttacaatcagataaatatgaggggattttaagcaaattgaagggtctgcaaagcaaatctcatattggcaagaaaatcta |
46875277 |
T |
|
| Q |
501 |
atgtatcccatgagcaggagtaggatgtacctttgttt |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46875278 |
atgtatcccatgagcaggagtaggatgtacctttgttt |
46875315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 23895211 - 23895174
Alignment:
| Q |
310 |
ctctatgcacccggtggattgctcaacctctgaaataa |
347 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23895211 |
ctctatgcaccccgtggattgctcaacctctgaaataa |
23895174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University