View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0355_low_5 (Length: 416)

Name: NF0355_low_5
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0355_low_5
NF0355_low_5
[»] chr5 (5 HSPs)
chr5 (94-407)||(38921373-38921686)
chr5 (176-377)||(35968556-35968757)
chr5 (94-176)||(39017179-39017261)
chr5 (177-303)||(16727813-16727939)
chr5 (179-281)||(35967351-35967453)
[»] chr7 (6 HSPs)
chr7 (176-407)||(41739622-41739853)
chr7 (178-257)||(42537718-42537797)
chr7 (176-257)||(45291933-45292014)
chr7 (176-257)||(38516620-38516701)
chr7 (176-257)||(45296058-45296139)
chr7 (168-244)||(40601815-40601891)
[»] chr4 (5 HSPs)
chr4 (176-407)||(30829927-30830157)
chr4 (176-407)||(52190187-52190430)
chr4 (176-303)||(52189186-52189313)
chr4 (267-311)||(31409401-31409445)
chr4 (179-301)||(8480884-8481006)
[»] chr1 (6 HSPs)
chr1 (176-407)||(35063452-35063683)
chr1 (176-303)||(26529508-26529635)
chr1 (176-303)||(36573962-36574089)
chr1 (175-262)||(49919676-49919763)
chr1 (211-280)||(35062599-35062668)
chr1 (176-280)||(36575494-36575598)
[»] chr8 (8 HSPs)
chr8 (176-407)||(17864533-17864776)
chr8 (173-301)||(17863463-17863591)
chr8 (176-299)||(3870768-3870891)
chr8 (171-303)||(32565568-32565700)
chr8 (177-299)||(3872224-3872346)
chr8 (174-207)||(5014854-5014887)
chr8 (176-257)||(37241028-37241109)
chr8 (179-207)||(32564510-32564538)
[»] chr3 (11 HSPs)
chr3 (175-314)||(9099559-9099698)
chr3 (176-257)||(37464968-37465049)
chr3 (176-300)||(20997633-20997757)
chr3 (175-311)||(19801785-19801919)
chr3 (175-311)||(36163382-36163518)
chr3 (177-311)||(37463680-37463814)
chr3 (329-378)||(19801946-19801995)
chr3 (172-207)||(18912544-18912579)
chr3 (248-303)||(20884298-20884353)
chr3 (170-315)||(20998933-20999078)
chr3 (379-407)||(19801986-19802014)
[»] chr2 (4 HSPs)
chr2 (176-311)||(4753528-4753663)
chr2 (176-303)||(31622039-31622166)
chr2 (176-311)||(36669081-36669216)
chr2 (175-301)||(40894807-40894933)
[»] chr6 (5 HSPs)
chr6 (175-310)||(18191745-18191880)
chr6 (176-257)||(9448746-9448827)
chr6 (176-311)||(30758798-30758933)
chr6 (176-226)||(226121-226171)
chr6 (249-311)||(21396367-21396429)
[»] scaffold0115 (4 HSPs)
scaffold0115 (176-262)||(4336-4422)
scaffold0115 (176-262)||(6055-6141)
scaffold0115 (176-262)||(12076-12162)
scaffold0115 (176-262)||(13795-13881)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 94 - 407
Target Start/End: Original strand, 38921373 - 38921686
Alignment:
Q  94 cttatttccaattgttcttctttataattcagacaatgaccattacactcatttctctcgtatctcatccatcttttttaatgagtaaaccctcatttgg 193  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38921373 cttatttccaattgttcttatttataattcagacaatgaccattacactcatttctctcgtatctcatccatcttttttaatgagtaaaccctcatttgg 38921472  T
Q  194 gtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgttagtcaaatgcatccaaaa 293  Q
    |||| ||||||||||| ||  |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38921473 gtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaa 38921572  T
Q  294 cgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttcaatcttcttcaatgcccc 393  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38921573 cgttaacttggtgttaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttcaatcttcttcaatgcccc 38921672  T
Q  394 caattccttcatct 407  Q
    ||||||||||||||    
T  38921673 caattccttcatct 38921686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 176 - 377
Target Start/End: Complemental strand, 35968757 - 35968556
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    ||||||||||| | |||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||    
T  35968757 gagtaaacccttaattggatccctgaaagtgttgttcgctatcaggcacattcatagatcaatgaaacgaaccaaaaactcccccaattattgttttgtt 35968658  T
Q  276 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttc 375  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35968657 agtcaaatgcatccaaaacgttaacttggtgttaactttgttatactcatagatgagggaccaaaatgacaacaatcatgtttccgccatcatcttcttc 35968558  T
Q  376 aa 377  Q
    ||    
T  35968557 aa 35968556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 39017261 - 39017179
Alignment:
Q  94 cttatttccaattgttcttctttataattcagacaatgaccattacactcatttctctcgtatctcatccatcttttttaatg 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  39017261 cttatttccaattgttcttctttataattcagacaatgaccattacactcatttctctcatatctcattcatcttttttaatg 39017179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 16727813 - 16727939
Alignment:
Q  177 agtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtta 276  Q
    ||||||||||||||||||||  |||||||||   ||| |||||| ||| |||||  |||||  |||||||| ||||||| |  |||||  |||| |||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgtta 16727912  T
Q  277 gtcaaatgcatccaaaacgttaacttg 303  Q
    |||||||||||||||||| ||||||||    
T  16727913 gtcaaatgcatccaaaacattaacttg 16727939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 35967351 - 35967453
Alignment:
Q  179 taaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctag-atcaatgaaacgaaccaaaaactcctccaatgattgtttcgttag 277  Q
    ||||||||||||||| ||| |||||||     |||||||||| |||| |||| | |||||| |||| ||||||||||||| |||||| ||||| ||||||    
T  35967351 taaaccctcatttggatccctgaaagttcacatcgttatcagccaca-tcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttag 35967449  T
Q  278 tcaa 281  Q
    ||||    
T  35967450 tcaa 35967453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 176 - 407
Target Start/End: Original strand, 41739622 - 41739853
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||||||||||||||| | ||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  41739622 gagtaaaccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 41739721  T
Q  276 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttc 375  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  41739722 agtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggatcaaaatgacaacaatcatgtttctgccatcatctttttc 41739821  T
Q  376 aatcttcttcaatgcccccaattccttcatct 407  Q
    ||||||||||||||||||||||||||||||||    
T  41739822 aatcttcttcaatgcccccaattccttcatct 41739853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 42537718 - 42537797
Alignment:
Q  178 gtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 257  Q
    ||||||||||| |||||||| ||||||||||| ||| ||||||| |||| |||  |||||||||||||||||||||||||    
T  42537718 gtaaaccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactcc 42537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 45292014 - 45291933
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 257  Q
    |||||||||||||||||||||| |||||||||   ||| |||||||||||| |||  ||||| ||| |||||||||||||||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactcc 45291933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 38516620 - 38516701
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 257  Q
    |||||||||||||||||||||| |||||||||   ||| |||||| ||||| ||| |||||| ||| | |||||||||||||    
T  38516620 gagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactcc 38516701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 45296139 - 45296058
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 257  Q
    |||||||||||||||||||||| | |||||||   ||| |||||||||||| | | |||||| ||| |||||||||||||||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactcc 45296058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 40601891 - 40601815
Alignment:
Q  168 tttttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacg 244  Q
    |||||||  ||||||||||||||||||||| |||||||||   ||| |||||||||||| |||||| ||| ||||||    
T  40601891 tttttaaaaagtaaaccctcatttgggtccctgaaagtgtgcctcgctatcaggcacatccctagaacaaggaaacg 40601815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 176 - 407
Target Start/End: Original strand, 30829927 - 30830157
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  30829927 gagtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 30830026  T
Q  276 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttc 375  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  30830027 agtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggaccaaaatgac-acaatcatgtttctgccatcatctttttc 30830125  T
Q  376 aatcttcttcaatgcccccaattccttcatct 407  Q
    ||||||||||||||||| ||||||||||||||    
T  30830126 aatcttcttcaatgccctcaattccttcatct 30830157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 52190430 - 52190187
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||||||||||||||||| ||||||||    ||| |||||| || || | | ||||||| |||||||||||||||||| ||||||  ||||| |||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgtt 52190331  T
Q  276 agtcaaatgcatccaaaacgttaacttggtattaactctg------------ttatactcatagatgagggaccaaaatgacaacaatcatgtttctgcc 363  Q
    |||||||||||||||||||||||||||||| |||| | ||            ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52190330 agtcaaatgcatccaaaacgttaacttggtgttaaatgtgctgatgtgtccgttatactcatagacgagggaccaaaatgacaacaatcatgtttctgcc 52190231  T
Q  364 atcatcttcttcaatcttcttcaatgcccccaattccttcatct 407  Q
     |||||||||||||||||||||||||||| ||||||||||||||    
T  52190230 ttcatcttcttcaatcttcttcaatgccctcaattccttcatct 52190187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 52189186 - 52189313
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||||||||||||||||| ||||||||    ||| |||||| ||||| ||| ||||||| |||| || |||||||||   |||||  |||| ||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgtt 52189285  T
Q  276 agtcaaatgcatccaaaacgttaacttg 303  Q
    ||||||||||||||||||||||||||||    
T  52189286 agtcaaatgcatccaaaacgttaacttg 52189313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 31409401 - 31409445
Alignment:
Q  267 tgtttcgttagtcaaatgcatccaaaacgttaacttggtattaac 311  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  31409401 tgttccgttagtcaaatgcatccaaaacgttaacttggtgttaac 31409445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 301
Target Start/End: Complemental strand, 8481006 - 8480884
Alignment:
Q  179 taaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgttagt 278  Q
    ||||| |||||||| |||| |||||||||   ||| |||||| ||| | ||| ||||||||||||| |||||||||||| |||| |  | || |||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  279 caaatgcatccaaaacgttaact 301  Q
    ||    |||||||||||||||||    
T  8480906 cattcccatccaaaacgttaact 8480884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 35063683 - 35063452
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||||||||||||||||  ||||||||||| ||  ||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  35063683 gagtaaaccctcatttgggtctctgaaagtgttgctcactatcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaattattgtttcgtt 35063584  T
Q  276 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttc 375  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  35063583 agtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgacaacaatcatgtttctgccttcatcttcttc 35063484  T
Q  376 aatcttcttcaatgcccccaattccttcatct 407  Q
    ||||||||||||||||||||||||||||||||    
T  35063483 aatcttcttcaatgcccccaattccttcatct 35063452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 26529508 - 26529635
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||||||||||||||||| |||||||||   ||| |||||| ||| | |||  |||||  |||||||| |||||||||  ||||| |||||  |||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgtt 26529607  T
Q  276 agtcaaatgcatccaaaacgttaacttg 303  Q
    ||||||||||||||||||||||||||||    
T  26529608 agtcaaatgcatccaaaacgttaacttg 26529635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 36573962 - 36574089
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||| ||||||| ||||| |||||||||   ||| |||||  ||| | |||  |||||  |||||||| |||||||||  |||||  |||| ||||    
T  36573962 gagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgtt 36574061  T
Q  276 agtcaaatgcatccaaaacgttaacttg 303  Q
    ||||||||||||||||||||||||||||    
T  36574062 agtcaaatgcatccaaaacgttaacttg 36574089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 49919763 - 49919676
Alignment:
Q  175 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 262  Q
    ||||||||| |||||||||||||||||||||||   ||| |||||| ||| | ||| ||||||||||||| |||||||||||| ||||    
T  49919763 tgagtaaactctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaa 49919676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 35062599 - 35062668
Alignment:
Q  211 tcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgttagtca 280  Q
    |||||||||  ||||| |||  |||||| |||| ||||||||||||| |||||| ||||| |||||||||    
T  35062599 tcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtca 35062668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 36575598 - 36575494
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    ||||||||||||||||| |||| |||||||||   ||| |||||| ||| | | || |||||  |||||||||||||||| |  |||||  |||| ||||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgtt 36575499  T
Q  276 agtca 280  Q
    |||||    
T  36575498 agtca 36575494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 17864776 - 17864533
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||||||||||||| ||||||||||||    ||| |||||| ||||| ||  ||||||  ||||||||||| ||||||  |||||  | ||| |||    
T  17864776 gagtaaaccctcatttggttccttgaaagtgcatctcgctatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgtt 17864677  T
Q  276 agtcaaatgcatccaaaacgttaacttggtattaactctgtt------------atactcatagatgagggaccaaaatgacaacaatcatgtttctgcc 363  Q
    ||||||||||||||||||| |||||||||| |||| | ||||            |||||||||||  |||||||||||||||| ||||||||||||||||    
T  17864676 agtcaaatgcatccaaaacattaacttggtgttaattgtgttgatgtgtccattatactcatagactagggaccaaaatgacagcaatcatgtttctgcc 17864577  T
Q  364 atcatcttcttcaatcttcttcaatgcccccaattccttcatct 407  Q
     |||||||||||||||||||||||||  | ||||||||||||||    
T  17864576 ttcatcttcttcaatcttcttcaatgttctcaattccttcatct 17864533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 17863463 - 17863591
Alignment:
Q  173 aatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttc 272  Q
    ||||||||||||||||||||||||| ||||||||    ||| |||||| ||||| | | ||||||| |||  ||||||||||||||||||||  |||| |    
T  17863463 aatgagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttcc 17863562  T
Q  273 gttagtcaaatgcatccaaaacgttaact 301  Q
    || ||||||||||||||||||||||||||    
T  17863563 gtcagtcaaatgcatccaaaacgttaact 17863591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 3870768 - 3870891
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    ||||||||||||| |||||||| ||||| ||   |||| |||||| ||| | ||||||||||| || |||| |||||||||| |||||  ||||| ||||    
T  3870768 gagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgtt 3870867  T
Q  276 agtcaaatgcatccaaaacgttaa 299  Q
    |||||| | | |||||||||||||    
T  3870868 agtcaatttcgtccaaaacgttaa 3870891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 303
Target Start/End: Complemental strand, 32565700 - 32565568
Alignment:
Q  171 ttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtt 270  Q
    |||| |||||||||||| ||| ||||| |||||||||   ||| |||||| |   | ||| |||||||  || ||| |||||||||| ||||||   |||    
T  32565700 ttaaggagtaaaccctcgtttaggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaatttaatgaatcaaaaactcccccaatgtacgtt 32565601  T
Q  271 tcgttagtcaaatgcatccaaaacgttaacttg 303  Q
      |||||||||||||||||||||||||||||||    
T  32565600 atgttagtcaaatgcatccaaaacgttaacttg 32565568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 299
Target Start/End: Complemental strand, 3872346 - 3872224
Alignment:
Q  177 agtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtta 276  Q
    ||||||||||| ||||||||| ||||||||    ||| |||||| ||| | |||  |||||| |||||||||||||||||   ||||| || || |||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgtta 3872247  T
Q  277 gtcaaatgcatccaaaacgttaa 299  Q
    ||||| | | |||||||||||||    
T  3872246 gtcaatttcgtccaaaacgttaa 3872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 5014887 - 5014854
Alignment:
Q  174 atgagtaaaccctcatttgggtccttgaaagtgt 207  Q
    |||||||||||||||||||||||| |||||||||    
T  5014887 atgagtaaaccctcatttgggtccctgaaagtgt 5014854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 37241028 - 37241109
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 257  Q
    ||||||| |||| ||||||| | |||||||||   ||| |||||| ||| ||| | ||||||||||||| ||||||||||||    
T  37241028 gagtaaatcctcgtttgggttcctgaaagtgtatctcgctatcagtcacgttcttggatcaatgaaacgcaccaaaaactcc 37241109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 32564510 - 32564538
Alignment:
Q  179 taaaccctcatttgggtccttgaaagtgt 207  Q
    |||||||||||||||||||||||||||||    
T  32564510 taaaccctcatttgggtccttgaaagtgt 32564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 9099559 - 9099698
Alignment:
Q  175 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 274  Q
    ||||||||||||||||||||||| | |||||||   ||| ||||| |||||| |||  |||||||||||||||||||||||| | ||||| | ||| |||    
T  9099559 tgagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttccgt 9099658  T
Q  275 tagtcaaatgcatccaaaacgttaacttggtattaactct 314  Q
    |||||||||   |||||||||||||||| || ||||||||    
T  9099659 tagtcaaataagtccaaaacgttaacttagtgttaactct 9099698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 37465049 - 37464968
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 257  Q
    ||||||||||| |||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||| |||||||||||||    
T  37465049 gagtaaaccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactcc 37464968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 20997633 - 20997757
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||||||||||||||||| ||||| |||   ||| ||||| |||||| ||  ||||||| |||| |||||||||||||| ||||| | ||||||||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgtt 20997732  T
Q  276 agtcaaatgcatccaaaacgttaac 300  Q
    ||||||||   ||||||||||||||    
T  20997733 agtcaaataagtccaaaacgttaac 20997757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 19801785 - 19801919
Alignment:
Q  175 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 274  Q
    ||||||||||||||||  ||||| |||||||||   ||| ||||||  || | | ||||||||| |||||||||||||||||| ||| |  ||| || ||    
T  19801785 tgagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactcccccatt--ttgatttgt 19801882  T
Q  275 tagtcaaatgcatccaaaacgttaacttggtattaac 311  Q
    |||||||||  ||||||||||||||||| || |||||    
T  19801883 tagtcaaatttatccaaaacgttaactttgtgttaac 19801919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 36163382 - 36163518
Alignment:
Q  175 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 274  Q
    |||||||||| |||||||| ||| |||||||||   ||| |||||| |  || |||  ||||||  || ||| |||||||||| ||||||   |||  ||    
T  36163382 tgagtaaaccttcatttggatccctgaaagtgtccctcgctatcagaccaatccctcaatcaatttaatgaatcaaaaactcccccaatgtacgttatgt 36163481  T
Q  275 tagtcaaatgcatccaaaacgttaacttggtattaac 311  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36163482 tagtcaaatgcatccaaaacgttaacttggtgttaac 36163518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 311
Target Start/End: Original strand, 37463680 - 37463814
Alignment:
Q  177 agtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtta 276  Q
    |||||||||||  |||||| | ||||||||||  ||| ||||| |||| | ||| |||||||||||||| |||||||||| || ||||  | || | |||    
T  37463680 agtaaaccctcgcttgggttcctgaaagtgtttctcgctatcaagcacgtccctggatcaatgaaacgatccaaaaactcatctaatgtctcttccatta 37463779  T
Q  277 gtcaaatgcatccaaaacgttaacttggtattaac 311  Q
    ||||  | | ||||||||||||||||||| |||||    
T  37463780 gtcatttacgtccaaaacgttaacttggtgttaac 37463814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 19801946 - 19801995
Alignment:
Q  329 tgagggaccaaaatgacaacaatcatgtttctgccatcatcttcttcaat 378  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||||||||||    
T  19801946 tgagggaccaaaatgaccacaattatgtttctgccttcaacttcttcaat 19801995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 18912544 - 18912579
Alignment:
Q  172 taatgagtaaaccctcatttgggtccttgaaagtgt 207  Q
    |||||||||||||||||||||||||| |||||||||    
T  18912544 taatgagtaaaccctcatttgggtccctgaaagtgt 18912579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 20884298 - 20884353
Alignment:
Q  248 caaaaactcctccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttg 303  Q
    ||||||||||||||||   ||||   ||||||||||||||||||||||||||||||    
T  20884298 caaaaactcctccaatacatgttctcttagtcaaatgcatccaaaacgttaacttg 20884353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 315
Target Start/End: Complemental strand, 20999078 - 20998933
Alignment:
Q  170 tttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgt 269  Q
    |||| |||||||| |||||||| | ||| |||||||||   | |||||||| |||||  ||  |||||||||| |||  ||||||| || ||||| |  |    
T  20999078 tttattgagtaaatcctcatttagatccctgaaagtgtacattgttatcagacacatcactgaatcaatgaaatgaattaaaaacttcttcaatgttgat 20998979  T
Q  270 ttcgttagtcaaatgcatccaaaacgttaacttggtattaactctg 315  Q
    | ||||||| ||||   |||||||||||||||| || |||||||||    
T  20998978 tccgttagttaaataagtccaaaacgttaacttagtgttaactctg 20998933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Original strand, 19801986 - 19802014
Alignment:
Q  379 cttcttcaatgcccccaattccttcatct 407  Q
    |||||||||||||||||||||||||||||    
T  19801986 cttcttcaatgcccccaattccttcatct 19802014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 4753528 - 4753663
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    |||||||||||| ||||||||| |||||||||   ||| |||||| |   | ||| ||||||| ||| ||| ||||||||||  |||||  ||||| |||    
T  4753528 gagtaaaccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgtt 4753627  T
Q  276 agtcaaatgcatccaaaacgttaacttggtattaac 311  Q
    |||||||||||||||||||||||||||||| |||||    
T  4753628 agtcaaatgcatccaaaacgttaacttggtgttaac 4753663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 303
Target Start/End: Complemental strand, 31622166 - 31622039
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    ||||||||||| |||||||||| |||||||||   |||||||||  ||| | |||  |||||  |||| ||| |||||||||  ||||| ||||| ||||    
T  31622166 gagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtt 31622067  T
Q  276 agtcaaatgcatccaaaacgttaacttg 303  Q
     |||||||||||||||||||||||||||    
T  31622066 tgtcaaatgcatccaaaacgttaacttg 31622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 311
Target Start/End: Complemental strand, 36669216 - 36669081
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    ||||||||||| |||||| ||| ||||||||    ||| |||||| ||| | |||  |||||  |||| ||| |||||||||  |||||  ||||  |||    
T  36669216 gagtaaaccctaatttggatccatgaaagtgcacctcgctatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgtt 36669117  T
Q  276 agtcaaatgcatccaaaacgttaacttggtattaac 311  Q
    |||||||||||||||||||||||||||| |||||||    
T  36669116 agtcaaatgcatccaaaacgttaacttgatattaac 36669081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 40894933 - 40894807
Alignment:
Q  175 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 274  Q
    ||||||||||||||||||| ||| | |||||||   ||| ||||||| || | ||| |||||||||||||||| ||||||||| ||||||  | || |||    
T  40894933 tgagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 40894834  T
Q  275 tagtcaaatgcatccaaaacgttaact 301  Q
    ||||||    | |||||||||||||||    
T  40894833 tagtcattcacgtccaaaacgttaact 40894807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 18191745 - 18191880
Alignment:
Q  175 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 274  Q
    ||||||||||||||||||||||| |||||||||    || |||||| |   | |||  ||||||  || ||| |||||||||| ||||||  ||||  ||    
T  18191745 tgagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgtatgttatgt 18191844  T
Q  275 tagtcaaatgcatccaaaacgttaacttggtattaa 310  Q
    ||||||||||||||||||||||||||||||||||||    
T  18191845 tagtcaaatgcatccaaaacgttaacttggtattaa 18191880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 9448827 - 9448746
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 257  Q
    |||||||||||||||||||||| |||||||||   ||| |||||| ||||| ||| |||||| ||| |||||||||||||||    
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactcc 9448746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 311
Target Start/End: Complemental strand, 30758933 - 30758798
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 275  Q
    ||||||||||||||||||||||||||||||||   ||| | |||  | | |   | ||||||| ||  ||| ||||||||||  |||||  ||||| |||    
T  30758933 gagtaaaccctcatttgggtccttgaaagtgtccctcgctgtcacacccgtcatttgatcaataaattgaatcaaaaactccctcaatgtatgttttgtt 30758834  T
Q  276 agtcaaatgcatccaaaacgttaacttggtattaac 311  Q
    ||||||||||||||||||| |||||||||| |||||    
T  30758833 agtcaaatgcatccaaaacattaacttggtgttaac 30758798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 226121 - 226171
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacat 226  Q
    ||||||||||||||||||||||||||||||||   ||| ||||||||||||    
T  226121 gagtaaaccctcatttgggtccttgaaagtgtgcctcgctatcaggcacat 226171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 21396367 - 21396429
Alignment:
Q  249 aaaaactcctccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtattaac 311  Q
    ||||||||||||||||  ||||   |||||||||| ||||||||||| ||||||||| |||||    
T  21396367 aaaaactcctccaatgtatgttcttttagtcaaatacatccaaaacgctaacttggtgttaac 21396429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 4336 - 4422
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 262  Q
    |||||||||||| ||||| ||| | |||||||   ||| |||||| ||| | ||||||||||||||||| |||||||||||| ||||    
T  4336 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaa 4422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 6141 - 6055
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 262  Q
    ||||||||||||||||| |||| |||||||||   ||| |||||| | | | ||||||| ||||||||| |||||||||||| ||||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 6055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 12076 - 12162
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 262  Q
    |||||||||||| ||||| ||| | |||||||   ||| |||||| ||| | ||||||||||||||||| |||||||||||| ||||    
T  12076 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaa 12162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 13881 - 13795
Alignment:
Q  176 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 262  Q
    ||||||||||||||||| |||| |||||||||   ||| |||||| | | | ||||||| ||||||||| |||||||||||| ||||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 13795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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