View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0355_low_7 (Length: 342)
Name: NF0355_low_7
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0355_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 2622155 - 2621897
Alignment:
| Q |
11 |
cagagcctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc |
110 |
Q |
| |
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|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622155 |
cagaacctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc |
2622056 |
T |
|
| Q |
111 |
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622055 |
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc |
2621956 |
T |
|
| Q |
211 |
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaacac |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621955 |
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaacac |
2621897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 2590600 - 2590342
Alignment:
| Q |
11 |
cagagcctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc |
110 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||| |
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| T |
2590600 |
cagaacctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttggaaaacattcgttctctaaccctcttagtcaagtattctcc |
2590501 |
T |
|
| Q |
111 |
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc |
210 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2590500 |
catgtaagcaaagctataatgttgaagtacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc |
2590401 |
T |
|
| Q |
211 |
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaacac |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
2590400 |
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaaagaatacac |
2590342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 2642495 - 2642732
Alignment:
| Q |
16 |
cctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatgt |
115 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||||||| |
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| T |
2642495 |
cctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttggaaaacattcgttctctaaccctcttagtcaagtattctcccatgt |
2642594 |
T |
|
| Q |
116 |
aagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |
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| T |
2642595 |
aagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaaatgcatagatcctaatttgcctcttgatctcatc |
2642694 |
T |
|
| Q |
216 |
atggttctccaaaaaataaaccgatataaccgacccca |
253 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||| |
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|
| T |
2642695 |
atggtcttccaaaaaataaactgatataactgacccca |
2642732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 2674327 - 2674576
Alignment:
| Q |
11 |
cagagcctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc |
110 |
Q |
| |
|
|||| ||||| |||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
2674327 |
cagaacctgtagaatttcgatcttcatcaaaccaaccaacttcaaaagtgagtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcc |
2674426 |
T |
|
| Q |
111 |
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc |
210 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |
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|
| T |
2674427 |
catgtaagcaaagctataatgttgaagtacattaacaaccaatgagataacagccaaccctagaaaacaaaacacatagatcctaatttgcttcttaatc |
2674526 |
T |
|
| Q |
211 |
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaa |
260 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||| ||||||||||||| |||| |
|
|
| T |
2674527 |
tcatcatggtcctccagaaaataaactgatacaaccgaccccaatgcaaa |
2674576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 2570839 - 2571081
Alignment:
| Q |
11 |
cagagcctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc |
110 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |
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|
| T |
2570839 |
cagaacctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttagaaaacattttttctctaaccctcttagtcaaatactctcc |
2570938 |
T |
|
| Q |
111 |
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||| |
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| T |
2570939 |
catgtaagcaaagctataatgttgaagcatattaataaccattgaaataacagccagccctagaaaacaaaaaccataaatcctaatttgtttcttgatc |
2571038 |
T |
|
| Q |
211 |
tcatcatggttctccaaaaaataaaccgatataaccgacccca |
253 |
Q |
| |
|
||||| |||| ||| | ||||||||| |||||||||||||||| |
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|
| T |
2571039 |
tcatcgtggtcctcaataaaataaactgatataaccgacccca |
2571081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 2449941 - 2449689
Alignment:
| Q |
16 |
cctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatgt |
115 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||| |||||||||||||||| |
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|
| T |
2449941 |
cctgtagaattttgatcttcatcaaaccaaccaacttcaaaagtgagtatcttggaaaacactctttctctaaccctcttagttaagtactctcccatgt |
2449842 |
T |
|
| Q |
116 |
aagcaaagctataatgttgaagcacattaacaaccattga-gataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcat |
214 |
Q |
| |
|
| ||||| | |||||| ||||||||||||| ||||||||| ||||| || ||||||||||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
2449841 |
atgcaaaacaataatgctgaagcacattaaaaaccattgaggataa-ggctaaccctagaaaacaaagcatataaatcctaatctgcttcttgatctcat |
2449743 |
T |
|
| Q |
215 |
catggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaaca |
268 |
Q |
| |
|
||||||| | | ||||||||| || ||| ||||||| | |||||||||||| |
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|
| T |
2449742 |
catggttgttaagaaaataaacagaaatagttgaccccattgcaaatgaaaaca |
2449689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 2436732 - 2436514
Alignment:
| Q |
22 |
gaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatgtaagcaa |
121 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2436732 |
gaattttgatcctcatcaaaccaaccaacttcaaaagtgagtatcttggaaaacattctttctctaatcctcttagtcaagtactctcccatgtaagcaa |
2436633 |
T |
|
| Q |
122 |
agctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcatcatggtt |
221 |
Q |
| |
|
||||||| |||| ||||| ||| | ||| || ||| | |||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| ||| |
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|
| T |
2436632 |
agctatactgttcaagcatattgaaaacaatagaggccaaagccaaccctagaaaacaaaaagcatacatcctaatctgcttcttcatctcatcacggtc |
2436533 |
T |
|
| Q |
222 |
ctccaaaaaataaaccgat |
240 |
Q |
| |
|
| || ||||||||||||| |
|
|
| T |
2436532 |
attcagaaaataaaccgat |
2436514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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