View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0355_low_7 (Length: 342)
Name: NF0355_low_7
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0355_low_7
Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 2622155 - 2621897
Alignment:
Q
11
cagagcctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
110
Q
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2622155
cagaacctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
2622056
T
Q
111
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
210
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2622055
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
2621956
T
Q
211
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaacac
269
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2621955
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaacac
2621897
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 2590600 - 2590342
Alignment:
Q
11
cagagcctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
110
Q
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||
T
2590600
cagaacctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttggaaaacattcgttctctaaccctcttagtcaagtattctcc
2590501
T
Q
111
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
210
Q
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2590500
catgtaagcaaagctataatgttgaagtacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
2590401
T
Q
211
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaacac
269
Q
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
T
2590400
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaaagaatacac
2590342
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 2642495 - 2642732
Alignment:
Q
16
cctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatgt
115
Q
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||
T
2642495
cctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttggaaaacattcgttctctaaccctcttagtcaagtattctcccatgt
2642594
T
Q
116
aagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcatc
215
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||
T
2642595
aagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaaatgcatagatcctaatttgcctcttgatctcatc
2642694
T
Q
216
atggttctccaaaaaataaaccgatataaccgacccca
253
Q
||||| |||||||||||||| |||||||| |||||||
T
2642695
atggtcttccaaaaaataaactgatataactgacccca
2642732
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 2674327 - 2674576
Alignment:
Q
11
cagagcctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
110
Q
|||| ||||| |||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||
T
2674327
cagaacctgtagaatttcgatcttcatcaaaccaaccaacttcaaaagtgagtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcc
2674426
T
Q
111
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
210
Q
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
T
2674427
catgtaagcaaagctataatgttgaagtacattaacaaccaatgagataacagccaaccctagaaaacaaaacacatagatcctaatttgcttcttaatc
2674526
T
Q
211
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaa
260
Q
|||||||||| ||||| ||||||||| |||| ||||||||||||| ||||
T
2674527
tcatcatggtcctccagaaaataaactgatacaaccgaccccaatgcaaa
2674576
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 2570839 - 2571081
Alignment:
Q
11
cagagcctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
110
Q
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
T
2570839
cagaacctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttagaaaacattttttctctaaccctcttagtcaaatactctcc
2570938
T
Q
111
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
210
Q
||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||
T
2570939
catgtaagcaaagctataatgttgaagcatattaataaccattgaaataacagccagccctagaaaacaaaaaccataaatcctaatttgtttcttgatc
2571038
T
Q
211
tcatcatggttctccaaaaaataaaccgatataaccgacccca
253
Q
||||| |||| ||| | ||||||||| ||||||||||||||||
T
2571039
tcatcgtggtcctcaataaaataaactgatataaccgacccca
2571081
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 2449941 - 2449689
Alignment:
Q
16
cctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatgt
115
Q
||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||
T
2449941
cctgtagaattttgatcttcatcaaaccaaccaacttcaaaagtgagtatcttggaaaacactctttctctaaccctcttagttaagtactctcccatgt
2449842
T
Q
116
aagcaaagctataatgttgaagcacattaacaaccattga-gataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcat
214
Q
| ||||| | |||||| ||||||||||||| ||||||||| ||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||
T
2449841
atgcaaaacaataatgctgaagcacattaaaaaccattgaggataa-ggctaaccctagaaaacaaagcatataaatcctaatctgcttcttgatctcat
2449743
T
Q
215
catggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaaca
268
Q
||||||| | | ||||||||| || ||| ||||||| | ||||||||||||
T
2449742
catggttgttaagaaaataaacagaaatagttgaccccattgcaaatgaaaaca
2449689
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 2436732 - 2436514
Alignment:
Q
22
gaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatgtaagcaa
121
Q
||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
T
2436732
gaattttgatcctcatcaaaccaaccaacttcaaaagtgagtatcttggaaaacattctttctctaatcctcttagtcaagtactctcccatgtaagcaa
2436633
T
Q
122
agctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcatcatggtt
221
Q
||||||| |||| ||||| ||| | ||| || ||| | |||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||
T
2436632
agctatactgttcaagcatattgaaaacaatagaggccaaagccaaccctagaaaacaaaaagcatacatcctaatctgcttcttcatctcatcacggtc
2436533
T
Q
222
ctccaaaaaataaaccgat
240
Q
| || |||||||||||||
T
2436532
attcagaaaataaaccgat
2436514
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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