View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0356_high_1 (Length: 801)
Name: NF0356_high_1
Description: NF0356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0356_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 718; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 1 - 791
Target Start/End: Complemental strand, 1347532 - 1346730
Alignment:
| Q |
1 |
acctgctactattggatttgatggtttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtgcacttaataactacgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1347532 |
acctgctactattggatttgatggtttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtacacttaataactacgcg |
1347433 |
T |
|
| Q |
101 |
atatatgcattgcttagcatttttcgtaaccacgttggttgaatagaacaatttgtggctg------------tgtccatatttcttgcattcatgacac |
188 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
1347432 |
atatatgctttgcttagcatttttcgtaaccacgttgcttgaatagaacaatttgttgctgatatatatattatgtccatatttcttgcattcatgacac |
1347333 |
T |
|
| Q |
189 |
tgctttattttgcacagagccattacctcttgttccattgcttgagttagttctacctctgaactttttccctctttagttttgcggtctaccttccttt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1347332 |
tgctttattttgcacagagccattacctctagttccattgcttgagttagttctacctctgaacttttgccctctttagttttgcggtctaccttccttt |
1347233 |
T |
|
| Q |
289 |
gcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaagg |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1347232 |
gcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaagg |
1347133 |
T |
|
| Q |
389 |
atgcttgcatatcattcaaggtctttgagataagatctttttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattt |
488 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1347132 |
atgcttgcaaatcattcaaggtctttgagataagatctttttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattt |
1347033 |
T |
|
| Q |
489 |
tcttcatgacttgtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1347032 |
tcttcatgacttgtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatctttgcaaaattcaat |
1346933 |
T |
|
| Q |
589 |
cagctcaaattcttgttttaagccttgcaacctttttcgttaaattggatctgcttcatatgttttgagcatatttcccaaacttgctttgttgttatag |
688 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1346932 |
cagctcaaattcttgttttaagccttgtaacctttttcgttaaattggatctgcttcatatgttttgagcatatttcccaaacttgctttgttgttatag |
1346833 |
T |
|
| Q |
689 |
catggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaacaaagctttttagtttgggagtggattagcagaatctttgtttggtct |
788 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
1346832 |
catggaaactcttttcaaaatctagtagctcctcatattgacttattaaaaacaaagctttttagtttgggagtggattagcagaatctttgtttggttt |
1346733 |
T |
|
| Q |
789 |
gtg |
791 |
Q |
| |
|
||| |
|
|
| T |
1346732 |
gtg |
1346730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 274 - 386
Target Start/End: Original strand, 8675805 - 8675916
Alignment:
| Q |
274 |
ggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctttcattcgcattt |
373 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |||||||||||| || || ||| | ||||||||||||||| |||||| ||||| ||||| |
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|
| T |
8675805 |
ggtctaccttcctttacacaaatcccttatttgtcagatttgttggagctgtaaatgtttgttcgattgtgtcacttga-cctttcactcattaacattt |
8675903 |
T |
|
| Q |
374 |
catgtgactccaa |
386 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
8675904 |
catgcgactccaa |
8675916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 500
Target Start/End: Original strand, 19807579 - 19807748
Alignment:
| Q |
329 |
tgcttgattgattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaaggatgcttgcatatcattcaaggtctttgagataagatcttt |
428 |
Q |
| |
|
|||||||| |||||||||||||||| |||| | ||| ||||||||||||||| ||||| || ||||| ||||||| ||||| || | | |||||||| |
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|
| T |
19807579 |
tgcttgatcgattgtgtcacttgact-tttcacttatttgcatttcatgtgactgcaagggtgattgcaaatcattctaggtcgctgtgttcagatcttt |
19807677 |
T |
|
| Q |
429 |
ttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattttcttcatgactt |
500 |
Q |
| |
|
| ||||||| ||||||| ||| ||||||||| ||| || |||||||| ||||||||||| |||||||| |
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|
| T |
19807678 |
t-gactcttcaattgctgctaatgcgtaattgaatcagcttgttagtgttagcacaattttctccatgactt |
19807748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 8675681 - 8675798
Alignment:
| Q |
16 |
atttgatggtttgaaaagtataggttttgtctccttatacaaatcaat-ggtccaacaattctagggtgcacttaataactacgcgatatatgcattgct |
114 |
Q |
| |
|
|||||| |||||||| | || ||| || ||||||||||||||||||| |||| |||||||||||||||||| ||||||| || ||||||| ||||| |
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|
| T |
8675681 |
atttgacggtttgaacaatacaggcttggtctccttatacaaatcaaacggtcttccaattctagggtgcacttgataactatgcaatatatgttttgct |
8675780 |
T |
|
| Q |
115 |
tagcatttttcgtaacca |
132 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
8675781 |
tagcattttctgtaacca |
8675798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 9619569 - 9619623
Alignment:
| Q |
270 |
ttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagctt |
324 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||||||||| |||| |||||||| |
|
|
| T |
9619569 |
ttgcggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagctt |
9619623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 749
Target Start/End: Complemental strand, 19653021 - 19652915
Alignment:
| Q |
644 |
tcatatgttttgagcata-tttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaaca |
742 |
Q |
| |
|
|||||||||||| ||||| ||| |||| || |||||||||||||||||||| | || |||| |||| ||| || ||| |||||||||||| |||||| |
|
|
| T |
19653021 |
tcatatgttttgtgcataattttccaagtttcatttgttgttatagcatggaattttttctcaagatctggtatctgctcatattgacttatttaaaaca |
19652922 |
T |
|
| Q |
743 |
aagcttt |
749 |
Q |
| |
|
||||||| |
|
|
| T |
19652921 |
aagcttt |
19652915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 515 - 693
Target Start/End: Original strand, 40036781 - 40036960
Alignment:
| Q |
515 |
ttattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagcctt |
614 |
Q |
| |
|
|||||||| | || |||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||||| ||| |
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|
| T |
40036781 |
ttattcttggttttattgaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtctt |
40036880 |
T |
|
| Q |
615 |
gcaacctttttcgttaaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgttatagcatgg |
693 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||||||||| ||||||||| |||| ||| |||||||||||||| |
|
|
| T |
40036881 |
gcaacctttttcgttaaattggatttgctccatgtgttttgagcataatttcccaagcttgttttattgttatagcatgg |
40036960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 427 - 698
Target Start/End: Original strand, 40031340 - 40031623
Alignment:
| Q |
427 |
ttttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattttcttcatgacttgtttttctgttatatta--------- |
517 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||| |||||| | |||||| | || ||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
40031340 |
ttttgactcttgagatgctgctatggcgtaattgaatcatcttgatagtgtttgcataatcttctccatgacttgtttttctgttgtattaccattgtta |
40031439 |
T |
|
| Q |
518 |
ttcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgca |
617 |
Q |
| |
|
||||||| || ||||||||| ||||| ||| ||||||||||| ||||| ||| || |||| |||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
40031440 |
ttcttcggtttattgaccaatgtatctatttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtcttgca |
40031539 |
T |
|
| Q |
618 |
acctttttcgttaaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgt--tatagcatggaaact |
698 |
Q |
| |
|
||||||||| ||||| ||||| |||| ||| |||||||||||| ||||||||| ||||||||| | | ||||||||||||||| |
|
|
| T |
40031540 |
acctttttctttaaactggatttgctccatgtgttttgagcataatttcccaagcttgctttgctattatatagcatggaaact |
40031623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 15785105 - 15785176
Alignment:
| Q |
25 |
tttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtgcacttaataacta |
96 |
Q |
| |
|
|||||| | ||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
15785105 |
tttgaacaatataggtttggtctccttataccaattaatggtccaccaattctagggtgcacttgataacta |
15785176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 32241253 - 32241112
Alignment:
| Q |
240 |
tctacctctgaactttttccctctttagttttgcggtctaccttcctttgcacaaatccctaatttgtcag-ttttgttggagcttgaagtgcttgattg |
338 |
Q |
| |
|
||||||||| || |||| |||||||| ||| | |||||||| |||||||||||||||||| || |||||| ||||| ||||||| || || ||| | | |
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|
| T |
32241253 |
tctacctctaaagttttgccctctttggtt--gaggtctaccatcctttgcacaaatccctcatctgtcagattttgaaggagctttaaatgtttggtcg |
32241156 |
T |
|
| Q |
339 |
attgtgtcacttgaccctttctttcattcgcatttcatgtgactc |
383 |
Q |
| |
|
||| ||||||| || |||||| |||||| ||||||||||||||| |
|
|
| T |
32241155 |
attatgtcactcga-cctttcactcattcacatttcatgtgactc |
32241112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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