View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0356_low_11 (Length: 234)

Name: NF0356_low_11
Description: NF0356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0356_low_11
NF0356_low_11
[»] chr1 (2 HSPs)
chr1 (23-234)||(31226568-31226779)
chr1 (23-233)||(31173676-31173868)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 31226568 - 31226779
Alignment:
Q  23 ccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgccgccgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31226568 ccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgccgccgca 31226667  T
Q  123 actttctttgctgctggctttgcagctgcaattttcttccccggagaagtccttgttgttgtctttgcaacctttgcattaggtttcgcttttgcagcag 222  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31226668 actttctttgctgctggctttgcagctgcgactttcttccccggagaagtccttgctgttgtctttgcaacctttgcattaggtttcgcttttgcagcag 31226767  T
Q  223 ttttggccttag 234  Q
    ||||||||||||    
T  31226768 ttttggccttag 31226779  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 31173868 - 31173676
Alignment:
Q  23 ccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgccgccgca 122  Q
    ||||||||||||||| |  | ||| ||||| ||||||||| |||||||||||||||||||||| ||| ||||||| |||| ||||||||               
T  31173868 ccttccccctctcttgatcgcaactttcttagccggagacctaacagtcttagtcttaggcttcacgttcttcactggagttttcttct----------- 31173780  T
Q  123 actttctttgctgctggctttgcagctgcaattttcttccccggagaagtccttgttgttgtctttgcaacctttgcattaggtttcgcttttgcagcag 222  Q
           |||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||    
T  31173779 -------ttgctgctggctttgcagttgcaactttcttccctggagaagtccttgtcgttgtctttgcaacctttgcattaggcttcactttcgcagcag 31173687  T

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