View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0356_low_14 (Length: 205)

Name: NF0356_low_14
Description: NF0356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0356_low_14
NF0356_low_14
[»] chr8 (12 HSPs)
chr8 (65-204)||(28371035-28371174)
chr8 (69-200)||(9218079-9218214)
chr8 (67-193)||(10660970-10661095)
chr8 (114-198)||(9286414-9286498)
chr8 (22-70)||(19781653-19781701)
chr8 (155-202)||(26136195-26136242)
chr8 (155-204)||(23540302-23540351)
chr8 (152-198)||(16600591-16600637)
chr8 (130-200)||(22713681-22713751)
chr8 (130-172)||(9006931-9006973)
chr8 (125-194)||(13110204-13110273)
chr8 (129-185)||(24680835-24680890)
[»] chr7 (10 HSPs)
chr7 (65-204)||(20145814-20145952)
chr7 (66-204)||(2546914-2547048)
chr7 (70-204)||(17600539-17600671)
chr7 (82-204)||(14987155-14987278)
chr7 (82-204)||(15416766-15416889)
chr7 (104-204)||(24832402-24832509)
chr7 (65-204)||(3743381-3743524)
chr7 (111-204)||(4173521-4173615)
chr7 (130-175)||(14961170-14961215)
chr7 (130-175)||(15390642-15390687)
[»] chr2 (6 HSPs)
chr2 (65-204)||(18929238-18929376)
chr2 (65-204)||(26650840-26650980)
chr2 (70-204)||(17402729-17402863)
chr2 (83-198)||(25520486-25520601)
chr2 (114-200)||(31404118-31404205)
chr2 (114-194)||(24543870-24543950)
[»] chr4 (5 HSPs)
chr4 (65-202)||(11361596-11361733)
chr4 (71-204)||(9409236-9409370)
chr4 (155-198)||(5358040-5358083)
chr4 (114-200)||(16675086-16675173)
chr4 (130-172)||(18558473-18558515)
[»] chr3 (15 HSPs)
chr3 (71-202)||(24699144-24699275)
chr3 (65-203)||(15686860-15686998)
chr3 (83-204)||(13428793-13428914)
chr3 (70-204)||(26010836-26010972)
chr3 (66-198)||(4765782-4765916)
chr3 (91-204)||(4769742-4769855)
chr3 (69-202)||(4832601-4832735)
chr3 (147-202)||(9033566-9033622)
chr3 (120-198)||(23378488-23378567)
chr3 (158-204)||(29614678-29614724)
chr3 (155-204)||(7148790-7148839)
chr3 (155-204)||(16243020-16243069)
chr3 (130-172)||(13409834-13409876)
chr3 (124-198)||(8737234-8737308)
chr3 (124-198)||(9089472-9089546)
[»] chr6 (9 HSPs)
chr6 (65-204)||(22397638-22397776)
chr6 (73-204)||(17524797-17524929)
chr6 (130-198)||(17947939-17948007)
chr6 (114-200)||(14763004-14763090)
chr6 (114-200)||(18713709-18713795)
chr6 (155-197)||(1177307-1177349)
chr6 (155-204)||(16177304-16177353)
chr6 (104-198)||(31126249-31126351)
chr6 (130-172)||(25945847-25945889)
[»] chr5 (13 HSPs)
chr5 (90-204)||(19218063-19218177)
chr5 (104-204)||(20060802-20060909)
chr5 (104-204)||(20058717-20058824)
chr5 (130-200)||(19924042-19924112)
chr5 (104-204)||(20064546-20064653)
chr5 (130-198)||(17167349-17167417)
chr5 (155-203)||(23210192-23210240)
chr5 (114-194)||(24878356-24878436)
chr5 (130-200)||(19926769-19926839)
chr5 (155-204)||(20713228-20713277)
chr5 (66-97)||(24878288-24878319)
chr5 (130-172)||(17987482-17987524)
chr5 (110-142)||(25951260-25951292)
[»] scaffold0264 (1 HSPs)
scaffold0264 (65-204)||(20794-20932)
[»] chr1 (10 HSPs)
chr1 (90-204)||(11013912-11014027)
chr1 (120-200)||(33103021-33103101)
chr1 (114-204)||(22607914-22608003)
chr1 (130-198)||(17615274-17615342)
chr1 (114-198)||(36571743-36571826)
chr1 (158-198)||(13202152-13202192)
chr1 (109-197)||(20146169-20146264)
chr1 (114-186)||(20866221-20866293)
chr1 (157-195)||(22620115-22620153)
chr1 (136-172)||(20886571-20886607)
[»] scaffold0337 (1 HSPs)
scaffold0337 (114-200)||(17221-17307)
[»] scaffold0002 (1 HSPs)
scaffold0002 (134-198)||(374211-374275)
[»] scaffold0555 (1 HSPs)
scaffold0555 (109-204)||(5749-5851)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 28371035 - 28371174
Alignment:
Q  65 gtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 164  Q
    |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||  |||||||||||||||||||||    
T  28371035 gtggcgtctttcgacagaaaaatggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaacttaaaggaacagtaaaatacaatgcattaaaa 28371134  T
Q  165 ataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||||  ||||||||||| |||||||||||||||||||    
T  28371135 ataaaggaggttcgacaaatactttacatacattctttat 28371174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 9218079 - 9218214
Alignment:
Q  69 cgtctttcgacagaaaaaa----ggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 164  Q
    |||||||||||||||||||    | ||||||||||||||| ||  ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  9218079 cgtctttcgacagaaaaaaaaaggtttttaaaagcaaagtaaaaacattaagtttaaattgcagaaacttaaaggaaagataaaatacaatgcattaaaa 9218178  T
Q  165 ataaaggtagttcgacaaatcctttacatacattct 200  Q
    |||||| | |||||||||||| ||||||||||||||    
T  9218179 ataaagatggttcgacaaatcatttacatacattct 9218214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 10660970 - 10661095
Alignment:
Q  67 ggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaat 166  Q
    ||||||||| |||||||||  ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||  ||||||||| |||||    
T  10660970 ggcgtctttggacagaaaag-ggttttaaaagcaaagtaaagacattaagtttaaattgcaggaagttaaaggaaaggtgaaacgcaatgcattcaaaat 10661068  T
Q  167 aaaggtagttcgacaaatcctttacat 193  Q
    |||||| ||||||||||||||||||||    
T  10661069 aaaggtggttcgacaaatcctttacat 10661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 9286498 - 9286414
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    ||||| ||| ||||| ||||||||  |||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||    
T  9286498 aagttaaaagtgcagaaacttaaaaaaaagataaattgcattgcattaaaaataaaggtagttcgacaaatcctttacatacatt 9286414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 19781653 - 19781701
Alignment:
Q  22 actccccgacacgccacctgcaaagagaaagtcaccatccaaggtggcg 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19781653 actccccgacacgccacctgcaaagagaaagtcaccatccaaggtggcg 19781701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 26136242 - 26136195
Alignment:
Q  155 tgcattaaaaataaaggtagttcgacaaatcctttacatacattcttt 202  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  26136242 tgcattaaaaataaaggtggtccgacaaatcctttacatacattcttt 26136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 23540351 - 23540302
Alignment:
Q  155 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  23540351 tgcattaaaaataaaggtggttcgaaaaatcttttacatacattctttat 23540302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 16600591 - 16600637
Alignment:
Q  152 caatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    |||||||||||||||||| || |||||||||||||||||| ||||||    
T  16600591 caatgcattaaaaataaatgtggttcgacaaatcctttacgtacatt 16600637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 22713751 - 22713681
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattct 200  Q
    ||||||||| |||| |||  |||| |||||||||||||||||| ||| ||||||| ||||||||| |||||    
T  22713751 aacttaaagaaaagataatttacattgcattaaaaataaaggtggtttgacaaattctttacatatattct 22713681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 9006931 - 9006973
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 172  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  9006931 aacttaaaggaaaggtaaaatgtattgcattaaaaataaaggt 9006973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 13110204 - 13110273
Alignment:
Q  125 gcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacata 194  Q
    |||| ||||||||| |||| |||| | || |||||||||||||||||| |||| ||||||| | ||||||    
T  13110204 gcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcaacaaatcatatacata 13110273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 24680890 - 24680835
Alignment:
Q  129 gaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatc 185  Q
    |||||||||| ||||||||| |||| |||||||||| |||| || ||||||||||||    
T  24680890 gaacttaaagaaaaggtaaattacattgcattaaaa-taaatgtggttcgacaaatc 24680835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 20145814 - 20145952
Alignment:
Q  65 gtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 164  Q
    ||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  20145814 gtggcgtctttcgacagaaaa-aggttttaaaagcaaagtaaatgcattaactttaaattgcagaaacttcaaggaaaggtagaatacaatgcattaaaa 20145912  T
Q  165 ataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  20145913 ataaaggtggttcgacaaatcctttacatacattctttat 20145952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 2546914 - 2547048
Alignment:
Q  66 tggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaa 165  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||    
T  2546914 tggcgtctttcgacggaaaaaaggttttaaaagcaaagaaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatg----taaaa 2547009  T
Q  166 taaaggtagttcgacaaatcctttacatacattctttat 204  Q
    ||||||| ||  | |||||||||||||| ||||||||||    
T  2547010 taaaggtggtctgccaaatcctttacatccattctttat 2547048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 17600539 - 17600671
Alignment:
Q  70 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 169  Q
    ||||||||||| ||||||||||||||||| ||||| |||| |  | ||||||||| ||  |||||||||||||| ||| |||||| ||||||||||||||    
T  17600539 gtctttcgacaaaaaaaaggttttaaaagaaaagtaaaggaa--aggtttaaattccataaacttaaaggaaagataacatacaaagcattaaaaataaa 17600636  T
Q  170 ggtagttcgacaaatcctttacatacattctttat 204  Q
    ||| |||||||||||||||||||||||||||||||    
T  17600637 ggttgttcgacaaatcctttacatacattctttat 17600671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 14987278 - 14987155
Alignment:
Q  82 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggt-aaaatacaatgcattaaaaataaaggtagttcgac 180  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||| |||| | ||||||||   |||||||||||||||| ||||||     
T  14987278 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 14987179  T
Q  181 aaatcctttacatacattctttat 204  Q
    ||||| ||||||||||||||||||    
T  14987178 aaatcttttacatacattctttat 14987155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 15416889 - 15416766
Alignment:
Q  82 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggt-aaaatacaatgcattaaaaataaaggtagttcgac 180  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||| |||| | ||||||||   |||||||||||||||| ||||||     
T  15416889 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 15416790  T
Q  181 aaatcctttacatacattctttat 204  Q
    ||||| ||||||||||||||||||    
T  15416789 aaatcttttacatacattctttat 15416766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 24832402 - 24832509
Alignment:
Q  104 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 196  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||||||       |||||||||||||| ||| ||||||||||| |||||||||||    
T  24832402 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataatggtggttcgacaaattctttacataca 24832501  T
Q  197 ttctttat 204  Q
    ||||||||    
T  24832502 ttctttat 24832509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 3743381 - 3743524
Alignment:
Q  65 gtggcgtctttcgacagaaaaaaggtttt--aaaagcaaagttaaggcatt-aagttt-aaattgcaggaacttaaaggaaaggtaaaatacaatgcatt 160  Q
    |||| ||||||||||| ||||| ||||||  || || ||||| |||||||| |||||| ||||||||| | ||| |||||||  |||| ||||| |||||    
T  3743381 gtggtgtctttcgacaaaaaaagggttttttaacagtaaagtaaaggcattcaagtttgaaattgcagaatcttgaaggaaaaataaagtacaaggcatt 3743480  T
Q  161 aaaaataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||||||||| ||||||||||||||||  ||||||| |||||    
T  3743481 aaaaataaaggtggttcgacaaatcctttgtatacattttttat 3743524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 4173615 - 4173521
Alignment:
Q  111 attaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||||||||||||||| ||||||||| |||    |||| ||| ||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  4173615 attaagtttaaattgcagaaacttaaagaaaaatacaaatgcaagtgcattaaagataaaactagttcgacaaatcctttacatacattctttat 4173521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 14961170 - 14961215
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagt 175  Q
    |||| |||| ||||||||||| || |||||||||||||||||||||    
T  14961170 aactcaaagaaaaggtaaaatgcattgcattaaaaataaaggtagt 14961215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 15390642 - 15390687
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagt 175  Q
    |||| |||| ||||||||||| || |||||||||||||||||||||    
T  15390642 aactcaaagaaaaggtaaaatgcattgcattaaaaataaaggtagt 15390687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 18929238 - 18929376
Alignment:
Q  65 gtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 164  Q
    ||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18929238 gtggcgtatttcgacataaaa-aggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatgcattaaaa 18929336  T
Q  165 ataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||||| |||||| ||||| ||||||||||||||||||    
T  18929337 ataaaggtggttcgataaatcttttacatacattctttat 18929376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 26650840 - 26650980
Alignment:
Q  65 gtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 163  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |    
T  26650840 gtggcttctttcgacagaaaaaagggttttaaaagcaaagtaaagacatgaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatggattata 26650939  T
Q  164 aataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  26650940 aataaaggtggttcgacaaatcctttacatacattctttat 26650980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 17402729 - 17402863
Alignment:
Q  70 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 169  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  17402729 gtctttcaacaaaaaaaaggttttaaaagcaaagtaaaggcaataagtttaaattgcagaaacttaaaggaaatataaaatacaatgcattaaaaataaa 17402828  T
Q  170 ggtagttcgacaaatcctttacatacattctttat 204  Q
    ||| |||  ||||||||||||||||||||||||||    
T  17402829 ggtggttatacaaatcctttacatacattctttat 17402863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 25520601 - 25520486
Alignment:
Q  83 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaa 182  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| || |||||| |||| |||| |||| |||||||||||||||||  |||||||||    
T  25520601 aaaaaggttttaaaagcaaagtaaaggcattaagttaaaattgcagaaagttaaagaaaagataaactacattgcattaaaaataaaggaggttcgacaa 25520502  T
Q  183 atcctttacatacatt 198  Q
    | ||||||||||||||    
T  25520501 aacctttacatacatt 25520486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 31404205 - 31404118
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatc-ctttacatacattct 200  Q
    ||||||||| ||||| ||||||||| ||||||||| | || ||||||||||  |||||| ||||||||||||  ||||||||||||||    
T  31404205 aagtttaaaatgcagaaacttaaagaaaaggtaaattgcattgcattaaaataaaaggtggttcgacaaatcattttacatacattct 31404118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 24543870 - 24543950
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacata 194  Q
    ||||| ||||||||  |||||  ||||||  |||| | || |||||||||||||||||| |||| | ||||||||||||||    
T  24543870 aagttaaaattgcaaaaacttgtaggaaaaataaattgcattgcattaaaaataaaggtggttccagaaatcctttacata 24543950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 7e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 11361596 - 11361733
Alignment:
Q  65 gtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 164  Q
    |||| |||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  11361596 gtggtgtcttttgacaggaaaaaagttttaaaagcaaagtaaaggcattaagtttaaattgcagaaatttaaatgaaaggtaaaatacaatgcattaaaa 11361695  T
Q  165 ataaaggtagttcgacaaatcctttacatacattcttt 202  Q
    |||||||| |||||||||||||||||||||||||||||    
T  11361696 ataaaggtggttcgacaaatcctttacatacattcttt 11361733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 9409370 - 9409236
Alignment:
Q  71 tctttcgacagaaaaaaggttttaaaa-gcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 169  Q
    |||| ||||||||||  |||||||||| ||||||| || | |||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  9409370 tcttacgacagaaaaggggttttaaaaagcaaagtaaaagtattaagtttaaattgcataaacttaaaggaaagataaaatacaatgcattaaaaataaa 9409271  T
Q  170 ggtagttcgacaaatcctttacatacattctttat 204  Q
    ||| |||||||||||||||||||||||||||||||    
T  9409270 ggtggttcgacaaatcctttacatacattctttat 9409236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 5358040 - 5358083
Alignment:
Q  155 tgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  5358040 tgcattaaaaataaaggtagttcgacaaatcatttacatacatt 5358083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 16675086 - 16675173
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatc-ctttacatacattct 200  Q
    ||||||||| ||||| ||| ||||| ||||||||| |  | |||||| |||||||| || ||||||||||||  ||||||||||||||    
T  16675086 aagtttaaaatgcagaaacataaagaaaaggtaaattgtattgcatttaaaataaaagtggttcgacaaatcattttacatacattct 16675173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 18558515 - 18558473
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 172  Q
    ||||||||||||| ||||||| || ||||||||||||||||||    
T  18558515 aacttaaaggaaatgtaaaatgcattgcattaaaaataaaggt 18558473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 24699275 - 24699144
Alignment:
Q  71 tctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 170  Q
    |||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24699275 tctttcgacagaaaaagggtttcataagcaaagtaaaggcattaagtttaaattgcataaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 24699176  T
Q  171 gtagttcgacaaatcctttacatacattcttt 202  Q
    || ||||||||||||||||| |||||||||||    
T  24699175 gtggttcgacaaatcctttaaatacattcttt 24699144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 203
Target Start/End: Original strand, 15686860 - 15686998
Alignment:
Q  65 gtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 164  Q
    ||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  15686860 gtggcgtgtttcgatagaaaaagggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaagcaaaggtaaaatacaatgcattaaaa 15686959  T
Q  165 ataaaggtagttcgacaaatcctttacatacattcttta 203  Q
    |||||||| || | | |||||| || |||||||||||||    
T  15686960 ataaaggtggtcctaaaaatccatttcatacattcttta 15686998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 13428914 - 13428793
Alignment:
Q  83 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaa 182  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||| || |||| ||||    
T  13428914 aaaagggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaatttaaaggaaagataaaatacaatgcattaataataaatgtggttcaacaa 13428815  T
Q  183 atcctttacatacattctttat 204  Q
    ||||||||||||||||||||||    
T  13428814 atcctttacatacattctttat 13428793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 26010836 - 26010972
Alignment:
Q  70 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaa---ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaat 166  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||||||||    |||||| |||||||||||||| ||||||||||||| ||||||||    
T  26010836 gtctttcgacagaaaag-gtttttaaaagcaaagtaaaggcattaagtttaataacttgcagaaacttaaaggaaagataaaatacaatgctttaaaaat 26010934  T
Q  167 aaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  26010935 aaaggtggttcgacaaatcatttacatacattctttat 26010972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 66 - 198
Target Start/End: Complemental strand, 4765916 - 4765782
Alignment:
Q  66 tggcgtctttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 163  Q
    |||||||||||||||  |||| |||||| ||||||||||| ||||||||||||||||| |||||  |||||||||||||  |||| ||||||||||||||    
T  4765916 tggcgtctttcgacatgaaaagggtttttaaaagcaaagtaaaggcattaagtttaaaattgcataaacttaaaggaaaaataaagtacaatgcattaaa 4765817  T
Q  164 aataaaggtagttcgacaaatcctttacatacatt 198  Q
    | ||||||| |||||||||||| ||||||||||||    
T  4765816 agtaaaggtggttcgacaaatcatttacatacatt 4765782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 4769742 - 4769855
Alignment:
Q  91 tttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttta 190  Q
    |||||||||||||| ||||||||||||||||||| ||  ||||||||||||||   ||||||||||||||| |||||||||| |||||| |||| | |||    
T  4769742 tttaaaagcaaagtaaaggcattaagtttaaatttcataaacttaaaggaaagaataaatacaatgcattagaaataaaggtggttcgaaaaattcgtta 4769841  T
Q  191 catacattctttat 204  Q
    ||||||||||||||    
T  4769842 catacattctttat 4769855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 4832735 - 4832601
Alignment:
Q  69 cgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaata 167  Q
    |||||||||| |||||||||| |||| ||||||| || ||| ||||||||||||||||||  |||| ||||||||  ||||||||||||||||||| |||    
T  4832735 cgtctttcgaaagaaaaaagggtttttaaagcaaggtaaagacattaagtttaaattgcataaactcaaaggaaaattaaaatacaatgcattaaatata 4832636  T
Q  168 aaggtagttcgacaaatcctttacatacattcttt 202  Q
    ||||| || |  || |||||||| ||| |||||||    
T  4832635 aaggtggtccagcagatcctttaaatatattcttt 4832601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 9033622 - 9033566
Alignment:
Q  147 aaatacaa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattcttt 202  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  9033622 aaatacaagtgcattaaaaataaaggtggtttgacaaatcctttacatacattcttt 9033566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 23378488 - 23378567
Alignment:
Q  120 aaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttc-gacaaatcctttacatacatt 198  Q
    |||||| || |||||||||||||| |||| | || |||||||||||||||||| ||||  ||||||||||||||||||||    
T  23378488 aaattgtagaaacttaaaggaaagataaattgcattgcattaaaaataaaggtggttcaaacaaatcctttacatacatt 23378567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 29614724 - 29614678
Alignment:
Q  158 attaaaaataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||    
T  29614724 attaaaaataaaggtggttcgacaaatcctttacatacattatttat 29614678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 7148790 - 7148839
Alignment:
Q  155 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||||||| |||| || |||||||||||||||||||||||||||||||    
T  7148790 tgcattaaaagtaaaagtggttcgacaaatcctttacatacattctttat 7148839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 16243069 - 16243020
Alignment:
Q  155 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  16243069 tgcattaaaaataaaagtggttcgacaaatgctttacatacattctttat 16243020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 13409834 - 13409876
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 172  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  13409834 aacttaaaggaaaggtaaaatgcattgcattaaaaataaaggt 13409876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 8737308 - 8737234
Alignment:
Q  124 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    ||||| || |||||| |||| |||| | || |||||| ||||||||||| |||| ||||||||||||||| ||||    
T  8737308 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 8737234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 9089546 - 9089472
Alignment:
Q  124 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    ||||| || |||||| |||| |||| | || |||||| ||||||||||| |||| ||||||||||||||| ||||    
T  9089546 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 9089472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 22397776 - 22397638
Alignment:
Q  65 gtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaa-ggaaaggtaaaatacaatgcattaaa 163  Q
    |||||||||||||||| ||||||||||||||||| |||||    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  22397776 gtggcgtctttcgacaaaaaaaaggttttaaaagaaaagtct--gcattaagtttaaattgcagaaacttaaaaggaaaggtaaaatacaatgcattaaa 22397679  T
Q  164 aataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  22397678 aataaaggttgttcgacaaatcctttacatacattctttat 22397638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 17524797 - 17524929
Alignment:
Q  73 tttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 170  Q
    |||||| | |||||||||||| |||| |||||| |||| ||||| |||||| ||| || ||||||||| |||  |||| || ||||||||||||||||||    
T  17524797 tttcgataaaaaaaaggtttttaaaaacaaagtaaaggaattaattttaaaattgtagaaacttaaagaaaaaataaattataatgcattaaaaataaag 17524896  T
Q  171 gtagttcgacaaatcctttacatacattctttat 204  Q
    || || |||| ||||||||| |||||||||||||    
T  17524897 gttgtccgac-aatcctttaaatacattctttat 17524929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 17948007 - 17947939
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    |||||||||||||| |||| | || || ||||||||||||||| |||||||||||||||||||||||||    
T  17948007 aacttaaaggaaagataaattgcattgaattaaaaataaaggtggttcgacaaatcctttacatacatt 17947939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 14763090 - 14763004
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattct 200  Q
    ||||| ||| ||||| ||||||||| |||| |||| | || |||||||||||||||||| |||||| || |||||||||||||||||    
T  14763090 aagttaaaagtgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgagaactcctttacatacattct 14763004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 18713709 - 18713795
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattct 200  Q
    ||||| ||| ||||| ||||||||| || | |||| | || ||| |||||||||||||| |||||||||||||||||||||||||||    
T  18713709 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattct 18713795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 1177349 - 1177307
Alignment:
Q  155 tgcattaaaaataaaggtagttcgacaaatcctttacatacat 197  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  1177349 tgcattaaaaataaaggtggttcgacaaatcctttacatacat 1177307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 16177304 - 16177353
Alignment:
Q  155 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  16177304 tgcattaaaaataaatgtggttcgaaaaatcctttacatacattctttat 16177353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 31126351 - 31126249
Alignment:
Q  104 ttaaggcattaagttt-aaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacatac 195  Q
    |||| ||||||||||| ||||||||| |||| |||| ||||  |||||||||       ||||||| |||||||||| ||||| ||||||||||||||||    
T  31126351 ttaatgcattaagttttaaattgcagaaactcaaagaaaagaaaaaatacaaatgcaagtgcattataaataaaggtggttcggcaaatcctttacatac 31126252  T
Q  196 att 198  Q
    |||    
T  31126251 att 31126249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 25945847 - 25945889
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 172  Q
    ||||||||||| ||||||||| || ||||||||||||||||||    
T  25945847 aacttaaaggagaggtaaaatgcattgcattaaaaataaaggt 25945889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 19218177 - 19218063
Alignment:
Q  90 ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt 189  Q
    ||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  19218177 ttttaaaagcaaagtaaaggcattaagtttaaattgtagaaacttaaaggaaatgtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt 19218078  T
Q  190 acatacattctttat 204  Q
    |||||||||||||||    
T  19218077 acatacattctttat 19218063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 20060802 - 20060909
Alignment:
Q  104 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 196  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||||||       |||||||||||||||||| |||||||||||||||||||||||    
T  20060802 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataaaggtggttcgacaaatcctttacataca 20060901  T
Q  197 ttctttat 204  Q
    || |||||    
T  20060902 ttgtttat 20060909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 20058824 - 20058717
Alignment:
Q  104 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 196  Q
    |||| |||||||||||||||||||| ||||||||  |||   |||||||||       |||||||||||||||||| ||||||||||| |||||||||||    
T  20058824 ttaatgcattaagtttaaattgcagaaacttaaataaaataaaaaatacaaatgcaattgcattaaaaataaaggtggttcgacaaattctttacataca 20058725  T
Q  197 ttctttat 204  Q
    ||||||||    
T  20058724 ttctttat 20058717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 19924112 - 19924042
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattct 200  Q
    ||||||||| |||| |||| |||| |||||||||||||||||| |||||||||||| |||| |||||||||    
T  19924112 aacttaaagaaaagataaattacattgcattaaaaataaaggtggttcgacaaatcttttatatacattct 19924042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 20064653 - 20064546
Alignment:
Q  104 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 196  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||| ||       |||||||||||||||||| |||| ||||||| ||||||||||    
T  20064653 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatataaatgcaagtgcattaaaaataaaggtggttcaacaaatcatttacataca 20064554  T
Q  197 ttctttat 204  Q
    || |||||    
T  20064553 ttttttat 20064546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 17167417 - 17167349
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    ||||||||| |||| |||| | || | |||||||||||||||| |||||||||||||||||||||||||    
T  17167417 aacttaaagaaaagataaattgcattacattaaaaataaaggtggttcgacaaatcctttacatacatt 17167349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 23210240 - 23210192
Alignment:
Q  155 tgcattaaaaataaaggtagttcgacaaatcctttacatacattcttta 203  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  23210240 tgcattaaaaataaaagtggttcgacaaatcctttacatacattcttta 23210192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 24878356 - 24878436
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacata 194  Q
    |||||||||  |||| ||||||||| |||| |||| | || |||||||||||||||||| ||| |||||||||||||||||    
T  24878356 aagtttaaaacgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggtttgacaaatcctttacata 24878436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 19926839 - 19926769
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattct 200  Q
    ||||||||| |||| |||| | || |||||||||||||||||| |||||||||||| ||||  ||||||||    
T  19926839 aacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgacaaatcttttatttacattct 19926769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 20713228 - 20713277
Alignment:
Q  155 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||||||||||||||| |||| |||||||  |||||||||||||||||    
T  20713228 tgcattaaaaataaaggttgttcaacaaatctgttacatacattctttat 20713277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 97
Target Start/End: Original strand, 24878288 - 24878319
Alignment:
Q  66 tggcgtctttcgacagaaaaaaggttttaaaa 97  Q
    ||||||||||||||||||||||||||||||||    
T  24878288 tggcgtctttcgacagaaaaaaggttttaaaa 24878319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 17987482 - 17987524
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 172  Q
    |||| |||||||||||||||| || ||||||||||||||||||    
T  17987482 aactcaaaggaaaggtaaaatgcattgcattaaaaataaaggt 17987524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 25951260 - 25951292
Alignment:
Q  110 cattaagtttaaattgcaggaacttaaaggaaa 142  Q
    ||||||||||||||||||| |||||||||||||    
T  25951260 cattaagtttaaattgcagaaacttaaaggaaa 25951292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 20794 - 20932
Alignment:
Q  65 gtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 164  Q
    ||||||||||| |||||||||| ||||||||||| |   | || |||||||||||||| ||||| ||||||||||||||  ||||| ||||||||| |||    
T  20794 gtggcgtcttttgacagaaaaa-ggttttaaaagtagtataaatgcattaagtttaaaatgcagaaacttaaaggaaagaaaaaatgcaatgcatttaaa 20892  T
Q  165 ataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    |||||||| |||| |||||| |||||||||||||||||||    
T  20893 ataaaggtggttccacaaattctttacatacattctttat 20932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 11014027 - 11013912
Alignment:
Q  90 ttttaaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctt 188  Q
    ||||||||||||||| ||||||||||||||||| || | | |||||||||||||  |||| ||||||||||||||||||||||| | |||||||||||||    
T  11014027 ttttaaaagcaaagtaaaggcattaagtttaaaattcctgaaacttaaaggaaaaataaagtacaatgcattaaaaataaaggtggctcgacaaatcctt 11013928  T
Q  189 tacatacattctttat 204  Q
    |||||| |||||||||    
T  11013927 tacatatattctttat 11013912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 33103021 - 33103101
Alignment:
Q  120 aaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattct 200  Q
    ||||||||| |||||||||||||| |||| | || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  33103021 aaattgcagaaacttaaaggaaagataaattgcattgcattaaaaataaatgtagttcgacaaatcctttacatacattct 33103101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 22608003 - 22607914
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttat 204  Q
    ||||| ||||||||| || ||||||||||| |||| |||| |||||||||||||||||| ||||  || |||||||||||||||| |||||    
T  22608003 aagttaaaattgcag-aatttaaaggaaagataaactacattgcattaaaaataaaggtggttcagcagatcctttacatacattttttat 22607914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 17615274 - 17615342
Alignment:
Q  130 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    ||||||||| |||||| || | || |||||| ||||||||||| |||||||||||||||||||||||||    
T  17615274 aacttaaagaaaaggttaactgcattgcattcaaaataaaggttgttcgacaaatcctttacatacatt 17615342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 36571826 - 36571743
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    ||||| ||| ||||| ||||||||| |||| | || | || |||||||||||||||||| |||||||||||||||||||||||||    
T  36571826 aagttaaaactgcagaaacttaaag-aaagattaattgcattgcattaaaaataaaggtggttcgacaaatcctttacatacatt 36571743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 13202192 - 13202152
Alignment:
Q  158 attaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  13202192 attaaaaataaaggtggttcgacaaatcctttacatacatt 13202152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 20146169 - 20146264
Alignment:
Q  109 gcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacatacat 197  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| ||       |||||||||||||||| | || | | |||||||||||||||||    
T  20146169 gcattaagtttaaattgcagaaacttaaagaaaaggaaaaataaaaatgcaagtgcattaaaaataaagatggtccaaaaaatcctttacatacat 20146264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 20866221 - 20866293
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcc 186  Q
    ||||| ||||||||| ||||||||| |||| |||| |    |||||||||||||||||| |||||||||||||    
T  20866221 aagttaaaattgcagaaacttaaagaaaagataaattgtgttgcattaaaaataaaggtggttcgacaaatcc 20866293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 22620153 - 22620115
Alignment:
Q  157 cattaaaaataaaggtagttcgacaaatcctttacatac 195  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  22620153 cattaaaaataaaggtggttcgacaaatcttttacatac 22620115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 20886571 - 20886607
Alignment:
Q  136 aaggaaaggtaaaatacaatgcattaaaaataaaggt 172  Q
    ||||||||||||||| || ||||||||||||||||||    
T  20886571 aaggaaaggtaaaatgcattgcattaaaaataaaggt 20886607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 17221 - 17307
Alignment:
Q  114 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattct 200  Q
    ||||| ||| ||||| ||||||||| || | |||| | || ||| |||||||||||||| |||||||||||||||||||||||||||    
T  17221 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattct 17307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 374275 - 374211
Alignment:
Q  134 taaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 198  Q
    |||||||||| |||| | || |||||||||||||||||| ||||||||||| |||||||||||||    
T  374275 taaaggaaagataaattgcattgcattaaaaataaaggtggttcgacaaatactttacatacatt 374211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 5851 - 5749
Alignment:
Q  109 gcattaagtttaaattgcaggaacttaaaggaaaggtaaaata------caa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctt 201  Q
    |||||||||||||||||||  ||||||||| ||||| ||||||      ||| |||||||||||||||||| || |||||||| |||||||||||||| |    
T  5851 gcattaagtttaaattgcaaaaacttaaagaaaaggaaaaataacaatgcaagtgcattaaaaataaaggtggtccgacaaattctttacatacattcct 5752  T
Q  202 tat 204  Q
    |||    
T  5751 tat 5749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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