View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0356_low_5 (Length: 401)
Name: NF0356_low_5
Description: NF0356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0356_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 142 - 372
Target Start/End: Complemental strand, 11571592 - 11571362
Alignment:
| Q |
142 |
catgaataattctatgtaccagatgcaataaaatatacaaaattaaagcatcagaaattaatgaaaacattatatcagagacataacagttaagaagcat |
241 |
Q |
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| T |
11571592 |
catgaataattctatgtaccagatgcaataaaatatacaaaattaaagcatcagaaattaaagaaaacattatatcagagacataacagttaagaagcat |
11571493 |
T |
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| Q |
242 |
aagcacaaaatattagaagttaagataaacaagaagtaaagggggtgaaactaaggctctaagagtgcggtttattgatcatgtctatcatagcagtcca |
341 |
Q |
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| T |
11571492 |
aagcacaaaatattagaagttaagataaacaagaagtaaagggtgtgcaactaaggctctaagattgcggtttattgatcatgtccatcatagcagtcca |
11571393 |
T |
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| Q |
342 |
gcatttgtctttgattgctcagccaaggttc |
372 |
Q |
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| T |
11571392 |
gcatttgtctttgattgctcagccaaggttc |
11571362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 11571733 - 11571640
Alignment:
| Q |
1 |
atgagaagaagattctcctaaactaattttatttaatttagtggactcggagcctaaatgttatcacgtatcttactccccttttgacatcaac |
94 |
Q |
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| T |
11571733 |
atgagaagaagattctcctaaactaattttatttaatttagtggactcggagcctaaatgttatcacgtatcttactccccttttgtcatcaac |
11571640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 11514521 - 11514603
Alignment:
| Q |
1 |
atgagaagaagattctcctaaactaattttatttaatttagtggactcggagcctaaatgttatcacgtatcttactcccctttt |
85 |
Q |
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| T |
11514521 |
atgagaagaaggttctcctaaattgatttt--ttaatttagtggacttagagcctaaatgatattacgtatcttactcccctttt |
11514603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 15552711 - 15552782
Alignment:
| Q |
24 |
taattttatttaatttagtggactcggagcctaaatgttatcacgtatcttactcccc-ttttgacatcaac |
94 |
Q |
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| T |
15552711 |
taattttatttaatttagtggactcagagcctaaatgtcattatatatcttactccccgttttgtcatcaac |
15552782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10327809 - 10327750
Alignment:
| Q |
1 |
atgagaagaagattctcctaaactaattttatttaatttagtggactcggagcctaaatg |
60 |
Q |
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| T |
10327809 |
atgagaagaaggttttcctaaattaattttatttaacttagcggactcagagcctaaatg |
10327750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22996398 - 22996334
Alignment:
| Q |
1 |
atgagaagaagattctcctaaactaattttatt--taatttagtggactcggagcctaaatgtta |
63 |
Q |
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||||||||||| |||||| ||| |||||||| | ||||||||||||||| |||||||||||||| |
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| T |
22996398 |
atgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagagcctaaatgtta |
22996334 |
T |
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