View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0356_low_6 (Length: 345)
Name: NF0356_low_6
Description: NF0356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0356_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 22193193 - 22192939
Alignment:
| Q |
1 |
gcataaataaacttaaagtatggtaactnnnnnnnnnnnngaaaccacaaaggaatatcttcgcgtaataaaaaaccatggatctgaatattatttacac |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22193193 |
gcataaataaacttaaagtatggtaactaaaaataaaaaagaaaccacaaaggaatatcttcgcataataaaaaaccatggatctgaatattatttacac |
22193094 |
T |
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| Q |
101 |
aaatttgtaagattgattttaaaatttgaaagaactaatagtatatagtaggcatgcagataaagtttaacttcactcggttatatacctaattcgtcca |
200 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22193093 |
aaatttgttagattgattttaaaatctgaaagaactaatagtatatagtaggcatgcagataaagtttaacttcactcggttatatacctaattcgtcca |
22192994 |
T |
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| Q |
201 |
tttagacaacaatatgataataacaaaccttcctttgaacagattgatatgatga |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22192993 |
tttagacaacaatatgataataacaaaccttcctttgaacagattgatatcatga |
22192939 |
T |
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