View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0357-Insertion-1 (Length: 1130)
Name: NF0357-Insertion-1
Description: NF0357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0357-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 252 - 938
Target Start/End: Complemental strand, 32319074 - 32318366
Alignment:
| Q |
252 |
tgtttaaataatacaactttaagtttaaatatgacatggatctcctaccgccgctgcactgtgcagtaggctagtagccctagggaattcaaatccgttt |
351 |
Q |
| |
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|||||||||||||||||| | |||||||||||| |||||||||| |||||||||||||| |||||||| | ||||||| ||||||||| || |
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| T |
32319074 |
tgtttaaataatacaactctgagtttaaatatggcatggatctctgaccgccgctgcactatgcagtag--------ctgtagggaactcaaatccgctt |
32318983 |
T |
|
| Q |
352 |
aagtgaggagtatagtaagttacctagatgaagaatgtgatgaaaccttgcatggcctaggatgtttgatggttcaacttgaggtattctacttgatgct |
451 |
Q |
| |
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|||||||||||| ||| |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32318982 |
aagtgaggagtaaagttagttacctgaatgaagaatgcgacgaaaccttgcatggcctaggatgtttgatggttcaacttgaggtattgtacttgatgct |
32318883 |
T |
|
| Q |
452 |
gctaatggtgcatttgggggtaaagattccaaatgaaaacgttgaaggccatcaacacttatatcttcaaaaacccttattgtaacactttgtatagctt |
551 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32318882 |
gctaatggtgcatttgtgggtaaagattccaaatgaaaacgttgaaagccatcaacacttatatcttcaaaaacccttattgcaacactttgtatagctt |
32318783 |
T |
|
| Q |
552 |
cagcctgttagaaattatgctgtacaaaatagtatacatt--------------attttaattgaagcttataagtaaactaaaattctaaaaatatggc |
637 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
32318782 |
cagcctgttagaaattatgttgtacaaaatagtatacattatttatagtttgatattttaattgatgcttataagtaaactaaaattctcaaaatatggc |
32318683 |
T |
|
| Q |
638 |
ttgatattaatttggtcataccacttggtaaggtcttgagtatttgtcattagcatacatagcgttgcagcacagtagatacacatcaaactacacatca |
737 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32318682 |
ttgatattaatttggtcataccacttggtaaggtcttgagtatttgtcattagcatacatagcgttgcagcacagtagatacacatcaaactacacgtca |
32318583 |
T |
|
| Q |
738 |
ttcaaagagatgaaca----------------ttacaaatcaatattaatgagaatggtcagaaatatgtataatgtatgatacatattaattggaagaa |
821 |
Q |
| |
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|||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32318582 |
ttcaaagagatgaatattcagttcaaagtattttacaagtcaatattaatgagaatggtcagaaatatgtataatgtatgatacatattaattggaagaa |
32318483 |
T |
|
| Q |
822 |
ggtcccaataaatttgtaatactatagtataaggaattgcaaatatattaatttgttaattaaccttaaaggcttccaagcttatataacgttcctcgtt |
921 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32318482 |
ggtcccaataaatttgtaatactatattataaggaattgcaaatatattaatttgttaattaaccttaaaggcttccaagcttatataacgttcctcgtt |
32318383 |
T |
|
| Q |
922 |
gattttggcccttattc |
938 |
Q |
| |
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||||||||||||||||| |
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| T |
32318382 |
gattttggcccttattc |
32318366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 382 - 751
Target Start/End: Complemental strand, 32365987 - 32365615
Alignment:
| Q |
382 |
aagaatgtgatgaaaccttgcatggcctaggatgtttgatggttcaacttgaggtattctacttgatgctgctaatggtgcatttgggggtaaagattcc |
481 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||||||||| |
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|
| T |
32365987 |
aagaatgcgacgaaaccttgcatggcctaggatgtttgatggttcaacttgaggtattgtacttgaagctgctaatggtgcatctgtgggtaaagattcc |
32365888 |
T |
|
| Q |
482 |
aaatgaaaacgttgaaggccatcaacacttatatcttcaaaaacccttattgtaacactttgtatagcttcagcctgttagaaattatgctgtacaaaat |
581 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32365887 |
aaatgaaaacgttgaaagccatcaacacttatatcttcaaaaacccttattgcaacactttgtatagcttcagcctgttagaaattatgttgtacaaaat |
32365788 |
T |
|
| Q |
582 |
agtatacattattttaattgaagcttataagt-aaactaaaattct--aaaaatatggcttgatattaatttggtcataccacttggtaaggtcttgagt |
678 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32365787 |
agtatacattattttaattgaagcttataagtaaaactaaaattctcaaaatatatggcttgatattaatttggtcataccacttgctaaggtcttgagt |
32365688 |
T |
|
| Q |
679 |
atttgtcattagcatacatagcgttgcagcacagtagatacacatcaaactacacatcattcaaagagatgaa |
751 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32365687 |
ctttgtcattagcatacataacgttgcagcacagtagatacacatcaaactacacatcattcaaagagatgaa |
32365615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 332 - 847
Target Start/End: Original strand, 32304781 - 32305315
Alignment:
| Q |
332 |
tagggaattcaaatccgtttaagtgaggagtatagtaagttacctagatgaagaatgtgatgaaaccttgcatggcctaggatgtttgatggttcaactt |
431 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
32304781 |
tagggaattcaaatccatttaagtgatgagtaaagttagttacctatatgaagaatgtgatgaaaccttgcatggcctaggattgtaggtggttcaactt |
32304880 |
T |
|
| Q |
432 |
gaggtattctacttgatgctgctaatggtgcatttgggggtaaagattccaaatgaaaacgttgaaggccatcaacacttatatcttcaaaaacccttat |
531 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32304881 |
gaggtattctacttgaggctgctaatggtgcatttgttggtaaagattccaaatgaaaacgttgaaagccatcaacacttatatcttcaaaaacccttat |
32304980 |
T |
|
| Q |
532 |
tgtaacactttgtatagcttcagcctgttagaaattatgctgtacaaaatagtatacattattt---taattgaa-gctta-------taagtaaactaa |
620 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| | || || |||||||| |
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| T |
32304981 |
tgcaacactttgtatagcttcagcctgttagaaattatgttgtacaaaatagtatacattatttatatttttgaatggatagatacattatttaaactaa |
32305080 |
T |
|
| Q |
621 |
aattctaaaaatatggcttgatattaatttggtcataccacttggtaaggtcttgagtatttgtcattagcatacatagcgttgcagcacagtagataca |
720 |
Q |
| |
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|||||| ||||||| ||||| ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32305081 |
aattctcaaaatatagcttgctattaatttagtcata-tacttggtaaggtcttgagtctttgtcattagcatacataacgttgcagcacagtagataca |
32305179 |
T |
|
| Q |
721 |
catcaaactacacatcattcaaagagatgaaca----------------ttacaaatcaatattaatgagaatggtcagaaatatgtataatgtatgata |
804 |
Q |
| |
|
||||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
32305180 |
catcaaactacacatttttgaaagagatgaagattcagttgaaagtattttacaaatcaatattaatgagaatggtgagaaat-------atgtatgata |
32305272 |
T |
|
| Q |
805 |
catattaattggaagaaggtcccaataaatttgtaatactata |
847 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32305273 |
catattaattggaagaaggtcccaataaatttgtaatactata |
32305315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 118 - 319
Target Start/End: Original strand, 32304227 - 32304430
Alignment:
| Q |
118 |
cacaaaaagagacacatgggtcgtataaagatacggttttccctttttaaatcttttttctctcctcgagccacatcgacacttatgcaggttgcatggt |
217 |
Q |
| |
|
||||| |||||||| |||| |||| |||||||||||||||| ||||| |||| |||||||||||||||||||||||| ||| |||| || ||||||| || |
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|
| T |
32304227 |
cacaagaagagacaaatggttcgtgtaaagatacggttttctcttttgaaatattttttctctcctcgagccacatcaacagttatacatgttgcattgt |
32304326 |
T |
|
| Q |
218 |
atacggtgtttatatatggtgtcgnnnnnnngcatgttta---aataatacaactttaagtttaaatatgacatggatctcctaccgccgctgcactgtg |
314 |
Q |
| |
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|||| | ||||| || ||||||| || |||||| ||||| || ||| ||||| ||||||||||||||||||||||| |||||||||| || |
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| T |
32304327 |
atacaatatttatgtacggtgtcg-tatcttgcgtgtttaaacaataacacgactctaagtgtaaatatgacatggatctcctactaccgctgcactatg |
32304425 |
T |
|
| Q |
315 |
cagta |
319 |
Q |
| |
|
||||| |
|
|
| T |
32304426 |
cagta |
32304430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 754 - 789
Target Start/End: Complemental strand, 32365596 - 32365561
Alignment:
| Q |
754 |
ttacaaatcaatattaatgagaatggtcagaaatat |
789 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32365596 |
ttacaaatcaatattaatgagaatggtgagaaatat |
32365561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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