View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0357-Insertion-10 (Length: 287)

Name: NF0357-Insertion-10
Description: NF0357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0357-Insertion-10
NF0357-Insertion-10
[»] chr8 (1 HSPs)
chr8 (7-282)||(6473115-6473390)
[»] chr6 (7 HSPs)
chr6 (37-282)||(13608259-13608503)
chr6 (205-278)||(33361317-33361390)
chr6 (215-278)||(33412747-33412810)
chr6 (205-272)||(12782319-12782386)
chr6 (215-278)||(12785768-12785831)
chr6 (215-278)||(33060384-33060447)
chr6 (215-278)||(33390902-33390965)
[»] chr4 (9 HSPs)
chr4 (60-282)||(31244237-31244459)
chr4 (215-278)||(31496144-31496207)
chr4 (174-278)||(31160061-31160165)
chr4 (211-282)||(31482036-31482107)
chr4 (215-278)||(31501314-31501377)
chr4 (50-104)||(31159937-31159991)
chr4 (205-278)||(31020690-31020763)
chr4 (205-278)||(31030571-31030644)
chr4 (225-278)||(31476204-31476257)
[»] chr2 (1 HSPs)
chr2 (215-278)||(17437877-17437940)
[»] scaffold1749 (1 HSPs)
scaffold1749 (52-92)||(812-852)
[»] scaffold0428 (1 HSPs)
scaffold0428 (52-92)||(9573-9613)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 6473115 - 6473390
Alignment:
Q  7 agaacagtttgtccttgtacatggatacaatcagcaatatttgccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaatca 106  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473115 agaacagtttgtccttgtacatggatgcaatcagcaatatttaccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaatca 6473214  T
Q  107 agatatgagattcttttatagcttgtagaagctcagatgatatatttcccccttttctgacgtttatatcatccctgaagacaacaatgcgatttttatg 206  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||    
T  6473215 agatatgagattcttttatagcttgtaggagctcagatgatatgtttccccctttttttaggtttatatcatccctgaagacaacaatgcgatttttatg 6473314  T
Q  207 aagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473315 aagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttc 6473390  T

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Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 37 - 282
Target Start/End: Complemental strand, 13608503 - 13608259
Alignment:
Q  37 tcagcaatatttgccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaatcaagatatgagattcttttatagcttgtagaa 136  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||| || |||||||| ||||| ||| |||  || ||||||  ||    
T  13608503 tcagcaatttttgccagttcttgtaagcaccatgtggaagaagcatagtttcttgagaagataacaatcaaaatatgggatccttcaatggcttgttcaa 13608404  T
Q  137 gctcagatgatatatttcccccttttctgacgtttatatcatccctgaagacaacaatgcgatttttatgaagagcaccaaaaagatgatcagtgaaatt 236  Q
    |||  |||||||||| | |||||||| | | |||| ||||||| |||||  ||||||||  |||||||||| |||| |||||||||||||||||||||||    
T  13608403 gcttggatgatatatgttcccctttttttaggtttgtatcatctctgaatgcaacaatgtcatttttatga-gagcgccaaaaagatgatcagtgaaatt 13608305  T
Q  237 gttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttc 282  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  13608304 gttgcgcgtgtcttcgccacggaagctcacaaacacatcatatttc 13608259  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 33361317 - 33361390
Alignment:
Q  205 tgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    ||||| ||| ||||||||  |||||||||||||||||| |||||||| |||| |||| | ||||||||||||||    
T  33361317 tgaagggcatcaaaaagaaaatcagtgaaattgttgcgagtgtcttcacctctaaagatgacaaacacatcata 33361390  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 33412747 - 33412810
Alignment:
Q  215 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    ||||||||| |||||||||||||||||| |||||||| ||||  ||| | ||||||||||||||    
T  33412747 caaaaagataatcagtgaaattgttgcgagtgtcttcacctctgaaggtgacaaacacatcata 33412810  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 12782319 - 12782386
Alignment:
Q  205 tgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacac 272  Q
    ||||| |||||||||||||||||||||||||||   || ||||||  |||||  ||||||||||||||    
T  12782319 tgaagggcaccaaaaagatgatcagtgaaattgaaacgtgtgtctgtgcctctgaagctcacaaacac 12782386  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 12785768 - 12785831
Alignment:
Q  215 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    ||||||||||||| |||||||||  ||| ||||||  ||||| ||||||||||||||| |||||    
T  12785768 caaaaagatgatcggtgaaattgaagcgtgtgtctgggcctctaaagctcacaaacacgtcata 12785831  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 33060384 - 33060447
Alignment:
Q  215 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    ||||||||  |||||||||||||||||| || ||||| |||| |||| | ||||||||||||||    
T  33060384 caaaaagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaacacatcata 33060447  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 33390902 - 33390965
Alignment:
Q  215 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    ||||||||  |||| ||||||||||||| |||||||| ||||| ||| | ||||||||||||||    
T  33390902 caaaaagaaaatcaatgaaattgttgcgagtgtcttcacctcggaaggtgacaaacacatcata 33390965  T

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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 60 - 282
Target Start/End: Complemental strand, 31244459 - 31244237
Alignment:
Q  60 caagcaccatgtggaagaagcatagttttttgagaaaattacaatcaagatatgagattcttttatagcttgtagaagctcagatgatatatttccccct 159  Q
    ||||||||| || ||||||||||||||  |||| || || |||||||| ||| | ||| |||  |||||||||||||||||||||||||||||| |||||    
T  31244459 caagcaccacgttgaagaagcatagttccttgaaaagataacaatcaaaatacgggatccttcaatagcttgtagaagctcagatgatatattttcccct 31244360  T
Q  160 tttctgacgtttatatcatccctgaagacaacaatgcgatttttatgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaa 259  Q
    ||  |||  ||| ||||||||||||||  ||||||||  |||||||| ||||  |||||||| |||||||||||||||||||| |||||  | |||| ||    
T  31244359 ttcttgagctttgtatcatccctgaaggtaacaatgccttttttatggagagtgccaaaaaggtgatcagtgaaattgttgcgtgtgtcgccacctctaa 31244260  T
Q  260 agctcacaaacacatcatatttc 282  Q
    |||||||||||||||||||||||    
T  31244259 agctcacaaacacatcatatttc 31244237  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 31496207 - 31496144
Alignment:
Q  215 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    |||||||||||||||||||||||||||| ||||| || |||| |||| | |||||||| |||||    
T  31496207 caaaaagatgatcagtgaaattgttgcgagtgtcctcacctctaaaggtgacaaacacgtcata 31496144  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 31160061 - 31160165
Alignment:
Q  174 atcatccctgaagacaacaatgcgatttttatgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacaca 273  Q
    ||||||||||||  |||| ||||  ||| | ||||| ||| ||||||||||||| |  ||||||||| | ||||||| ||||| |||||||||||| ||     
T  31160061 atcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatcggcaaaattgttgtgtgtgtcttggcctctaaagctcacaaaaacg 31160160  T
Q  274 tcata 278  Q
    |||||    
T  31160161 tcata 31160165  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 31482107 - 31482036
Alignment:
Q  211 gcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttc 282  Q
    ||||||||||||||||||||||| ||||| || ||||| || || |  || ||||||||||| |||||||||    
T  31482107 gcaccaaaaagatgatcagtgaatttgttacgtgtgtcatcaccacagaaactcacaaacacgtcatatttc 31482036  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 31501377 - 31501314
Alignment:
Q  215 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    |||||||||||| ||||||||||||||| |||||||| |||| |||  | |||||| |||||||    
T  31501377 caaaaagatgataagtgaaattgttgcgagtgtcttcacctctaaaagtgacaaacgcatcata 31501314  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 31159937 - 31159991
Alignment:
Q  50 ccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaat 104  Q
    |||| ||| ||||||||||||| || |||||||||||||||||||| | ||||||    
T  31159937 ccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaat 31159991  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 31020690 - 31020763
Alignment:
Q  205 tgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    ||||| ||| |||||||||||||| |||| |||  ||| || |||||||||| |||| | ||||||||||||||    
T  31020690 tgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaacacatcata 31020763  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 31030571 - 31030644
Alignment:
Q  205 tgaagagcaccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    ||||| ||| |||||||||||||| |||| |||  ||| || |||||||||| |||| | ||||||||||||||    
T  31030571 tgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaacacatcata 31030644  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 31476257 - 31476204
Alignment:
Q  225 atcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    |||||||||||||||||| || ||||| ||||  |||||||||||||| |||||    
T  31476257 atcagtgaaattgttgcgagtatcttcacctctgaagctcacaaacacgtcata 31476204  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 17437940 - 17437877
Alignment:
Q  215 caaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcata 278  Q
    ||||||||  |||||||||||||||||| || ||||| |||| |||| | ||||||||||||||    
T  17437940 caaaaagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaacacatcata 17437877  T

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Target: scaffold1749 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 812 - 852
Alignment:
Q  52 aattcttgcaagcaccatgtggaagaagcatagttttttga 92  Q
    |||||||||| ||||||||| ||||||||||||||| ||||    
T  812 aattcttgcaggcaccatgttgaagaagcatagtttcttga 852  T

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Target: scaffold0428 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 9573 - 9613
Alignment:
Q  52 aattcttgcaagcaccatgtggaagaagcatagttttttga 92  Q
    |||||||||| ||||||||| ||||||||||||||| ||||    
T  9573 aattcttgcaggcaccatgttgaagaagcatagtttcttga 9613  T

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