View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0357-Insertion-2 (Length: 1013)

Name: NF0357-Insertion-2
Description: NF0357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0357-Insertion-2
NF0357-Insertion-2
[»] chr7 (10 HSPs)
chr7 (8-705)||(33347169-33347866)
chr7 (8-705)||(33354209-33354893)
chr7 (872-972)||(33351001-33351101)
chr7 (872-1002)||(11592644-11592776)
chr7 (872-986)||(36650965-36651081)
chr7 (873-1002)||(32629567-32629698)
chr7 (872-970)||(38896606-38896704)
chr7 (873-986)||(24178391-24178506)
chr7 (872-944)||(39907574-39907646)
chr7 (901-967)||(33738551-33738617)
[»] chr4 (9 HSPs)
chr4 (872-986)||(48623722-48623838)
chr4 (872-972)||(23907497-23907597)
chr4 (873-972)||(27451369-27451468)
chr4 (872-953)||(1778212-1778293)
chr4 (872-924)||(435267-435319)
chr4 (873-964)||(16001138-16001230)
chr4 (898-970)||(56224752-56224824)
chr4 (873-951)||(39707472-39707551)
chr4 (872-913)||(53703655-53703696)
[»] chr8 (4 HSPs)
chr8 (872-1002)||(36544107-36544239)
chr8 (873-1002)||(15216465-15216596)
chr8 (896-933)||(42855234-42855271)
chr8 (911-972)||(3284684-3284744)
[»] chr6 (8 HSPs)
chr6 (872-1002)||(6082344-6082476)
chr6 (874-972)||(20428834-20428932)
chr6 (894-986)||(5260465-5260559)
chr6 (873-971)||(30669883-30669981)
chr6 (906-972)||(26290771-26290837)
chr6 (929-1010)||(9705744-9705828)
chr6 (873-970)||(30243749-30243845)
chr6 (913-970)||(3629255-3629312)
[»] chr5 (7 HSPs)
chr5 (872-986)||(24177495-24177611)
chr5 (872-1002)||(2076669-2076801)
chr5 (872-1002)||(1288723-1288855)
chr5 (872-1002)||(20317946-20318078)
chr5 (874-944)||(22832091-22832161)
chr5 (907-972)||(26946-27011)
chr5 (907-972)||(17212257-17212321)
[»] chr2 (6 HSPs)
chr2 (872-1002)||(8179748-8179880)
chr2 (891-986)||(24584823-24584920)
chr2 (873-972)||(13148309-13148408)
chr2 (872-946)||(452811-452885)
chr2 (873-952)||(45368822-45368901)
chr2 (906-967)||(37281098-37281159)
[»] chr1 (7 HSPs)
chr1 (872-1002)||(51441959-51442091)
chr1 (872-972)||(43241576-43241676)
chr1 (872-972)||(8670905-8671005)
chr1 (872-1002)||(49348597-49348728)
chr1 (891-964)||(32405674-32405747)
chr1 (873-947)||(11681833-11681907)
chr1 (873-965)||(29173725-29173819)
[»] chr3 (5 HSPs)
chr3 (872-986)||(51448904-51449020)
chr3 (872-963)||(52137824-52137915)
chr3 (873-986)||(38849073-38849188)
chr3 (873-965)||(3368757-3368849)
chr3 (873-957)||(27916580-27916664)
[»] scaffold0113 (1 HSPs)
scaffold0113 (875-963)||(13456-13544)
[»] scaffold0083 (1 HSPs)
scaffold0083 (891-986)||(52142-52239)


Alignment Details
Target: chr7 (Bit Score: 678; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 8 - 705
Target Start/End: Original strand, 33347169 - 33347866
Alignment:
Q  8 ggatttcctcacagcatccctagccagttctctatgcacctgttcagaattcaaataagcatagatgagacatttatagggtgatccttataagatatct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33347169 ggatttcctcacagcatccctagccagttctctatgcacctgttcagaattcaaataagcatagatgagacatttatagggtgatccttataagatatct 33347268  T
Q  108 aattgtaaacttagggaagtaaaaggaaaataactaaccttaatcccaagatacttgaccaaactgtaatcagcaaaagggttctcaaaaatacccatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33347269 aattgtaaacttagggaagtaaaaggaaaataactaaccttaatcccaagatacttgaccaaactgtaatcagcaaaagggttctcaaaaatacccatca 33347368  T
Q  208 tgaatttaacccgcaaaattcttctcaccgcatcatcaattcgagtcatagcaattaatttattattcaccaatgtcgttagttcatcaatgaattcggt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  33347369 tgaatttaacccgcaaaattcttctcaccgcatcatcaattcgagtcatagcaatgaatttattattcatcaatgtcgttagttcatcaatgaattcggt 33347468  T
Q  308 gtagttctttgtaaccaagaactgcaaacaaaagcaaagtgtgtaacaacatgaaatatttcctcactgtatgaacattattaattcaagcatacatata 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33347469 gtagttctttgtaaccaagaactgcaaacaaaagcaaagtgtgtaacaacatgaaatatttcctcactgtatgaacattattaattcaagcatacatatc 33347568  T
Q  408 atataatttaggcttaaattaccatgtcaatgccagcagaaactcctgctaaaactgaataagcgcagttagcacgatatggagaggtgatcttatcaat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33347569 atataatttaggcttaaattaccatgtcaatgccagcagaaactcctgctaaaactgaataagtgcagttagcacgatatggagaggtgatcttatcaat 33347668  T
Q  508 accgtctgaatctgaaataacaaatccctgttataacccaagaaaagcttaggggattagttatttgaaattttgcatatatgatgatttagattttcga 607  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33347669 accgtctgaatctgaaataacaaatccctgttataatccaagaaaagcttaggggattagttatttgaaattttgcatatatgatgatttagattttcga 33347768  T
Q  608 ggatacatttgatgaacagattatttacctggaaatggagagtgtttttgaggaagccagtaattaggtcgtgatgagcatgcattttatctccattc 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33347769 ggatacatttgatgaacagattatttacctggaaatggagagtgtttttgaggaagccagtaattaggtcgtgatgagcatgcattttatctccattc 33347866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 705
Target Start/End: Original strand, 33354209 - 33354893
Alignment:
Q  8 ggatttcctcacagcatccctagccagttctctatgcacctgttcagaattcaaataagcatagatgagacatttatagggtgatccttataag--atat 105  Q
    ||||||||| ||||| ||||||||||||||| | ||| |||||||| |||| ||| ||||||||| |||| |||||||||||| |||  |||||  ||||    
T  33354209 ggatttccttacagcttccctagccagttctttgtgctcctgttcaaaatttaaacaagcatagaagagatatttatagggtggtccagataagttatat 33354308  T
Q  106 ctaattgtaaacttagggaagtaaaaggaaaataactaaccttaatcccaagatacttgaccaaactgtaatcagcaaaagggttctcaaaaatacccat 205  Q
    ||||||  || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  33354309 ctaattcgaa-cttagggatgtaaaaggaaaatagctaaccttaatcccaagatatttgaccaaactgtaatcggcaaatgggttctcaaaaatacccat 33354407  T
Q  206 catgaatttaacccgcaaaattcttctcaccgcatcatcaattcgagtcatagcaattaatttattattcaccaatgtcgttagttcatcaatgaattcg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| |||||||||||||||    
T  33354408 catgaatttaacccgcaaaattcttctcaccgcatcatcaattcgactcataggaatgaatttattattcaccaatgttgttagatcatcaatgaattcg 33354507  T
Q  306 gtgtagttctttgtaaccaagaactgcaaacaaaagcaaagtgtgtaacaacatgaaatatttcctcactgtatgaacattattaattcaagcatacata 405  Q
    ||||||  ||||| ||||| |||||||||| | ||||||||||||||| || || |||| |||| ||||    |||||||||||||||||||||||| ||    
T  33354508 gtgtagaactttggaaccatgaactgcaaatacaagcaaagtgtgtaa-aatattaaatgtttcttcac----tgaacattattaattcaagcatacgta 33354602  T
Q  406 taatataatttaggcttaaattaccatgtcaatgccagcagaaactcctgctaaaactgaataagcgcagttagcacgatatggagaggtgatcttatca 505  Q
             |||||| |||| ||||||||||||||||||||| |||||||||  ||||||||||| ||||||||||||| |||||||||| ||| |||||    
T  33354603 ---------ttaggcctaaactaccatgtcaatgccagcagacactcctgcttgaactgaataagtgcagttagcacgaaatggagaggtaatcctatca 33354693  T
Q  506 ataccgtctgaatctgaaataacaaatccctgttataacccaagaaaagcttaggggattagttatttgaaattttgcatatatgatgatttagattttc 605  Q
    ||||| ||  ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  33354694 ataccctcaaaatctgaaataacaaatccctgtcataatccaagaaaagcttagggggttagttatttaaaattttgcatatatgatgatttagattttc 33354793  T
Q  606 gaggatacatttgatgaacagattatttacctggaaatggagagtgtttttgaggaagccagtaattaggtcgtgatgagcatgcattttatctccattc 705  Q
     | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||    
T  33354794 aatggtacatttgatgaacaaattatttacctggaaatggagagtgtttttgaggaagccagtaataagatcatgatgagcatgcattttatctccattc 33354893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 872 - 972
Target Start/End: Original strand, 33351001 - 33351101
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33351001 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 33351100  T
Q  972 t 972  Q
    |    
T  33351101 t 33351101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 872 - 1002
Target Start/End: Complemental strand, 11592776 - 11592644
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11592776 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 11592677  T
Q  972 --tctatagattggaa-taaagtggcttcttctc 1002  Q
      | |||||||||||| |||||| ||||||||||    
T  11592676 tttttatagattggaattaaagt-gcttcttctc 11592644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 872 - 986
Target Start/End: Complemental strand, 36651081 - 36650965
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  36651081 ctttcttagtcttctttcaatcaccctttcccataacttcatggtatgactcattagcttaattctcctataattcacgcaattttgtatatcccccttg 36650982  T
Q  972 t--ctatagattggaat 986  Q
    |   |||||||||||||    
T  36650981 ttcttatagattggaat 36650965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 873 - 1002
Target Start/End: Complemental strand, 32629698 - 32629567
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    ||||||||||||| ||  || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  32629698 tttcttagtcttcgttcaattaccctttcccataacttcatggtatgactcattagcttaattcccctgtaattcgcgcaatgttgtatatcccccttgt 32629599  T
Q  973 --ctatagattggaataaagtggcttcttctc 1002  Q
       ||||||||||||| |||  ||||||||||    
T  32629598 tcttatagattggaattaaggtgcttcttctc 32629567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 872 - 970
Target Start/End: Complemental strand, 38896704 - 38896606
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatccccctt 970  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||    
T  38896704 ctttcttagtcttctttcgatcacccttttccataacttcatggtatgactcattagcttaattcccctataatttgcgcaattttatatatcaccctt 38896606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 873 - 986
Target Start/End: Original strand, 24178391 - 24178506
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    ||||||||||||| ||  |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||  |||||||    
T  24178391 tttcttagtcttcgttgaatcaccctttcccataacttcatggtatgactcattagctaaattcccctataattcacgcaattctgtatatatcccttgt 24178490  T
Q  973 --ctatagattggaat 986  Q
       |||||||||||||    
T  24178491 tattatagattggaat 24178506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 872 - 944
Target Start/End: Original strand, 39907574 - 39907646
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataa 944  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  39907574 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattccccaataa 39907646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 901 - 967
Target Start/End: Original strand, 33738551 - 33738617
Alignment:
Q  901 cccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccc 967  Q
    |||| |||||||| ||||||||||| || |||||| || |||| || ||||||||||||| ||||||    
T  33738551 cccataacttcatagtatgactcataagtttaatttccttatattttgcgcaattttgtaaatcccc 33738617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 872 - 986
Target Start/End: Original strand, 48623722 - 48623838
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48623722 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 48623821  T
Q  972 t--ctatagattggaat 986  Q
    |   |||||||||||||    
T  48623822 ttcttatagattggaat 48623838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 872 - 972
Target Start/End: Original strand, 23907497 - 23907597
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23907497 ctttcttagtcttctttcgatcaccctttcccataactttatggtatgactcattagcttaattcccctataattcgcggaattttgtatatcccccttg 23907596  T
Q  972 t 972  Q
    |    
T  23907597 t 23907597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 873 - 972
Target Start/End: Original strand, 27451369 - 27451468
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    |||||||||||||  |  || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  27451369 tttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattatgtatatcccctttgt 27451468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 872 - 953
Target Start/End: Original strand, 1778212 - 1778293
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaa 953  Q
    ||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||    
T  1778212 ctttcttagtcttctttcgatcaccctttcccataattccatggtatgactcattagcttaattctcctataattcgcgcaa 1778293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 872 - 924
Target Start/End: Complemental strand, 435319 - 435267
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactca 924  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  435319 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactca 435267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 873 - 964
Target Start/End: Original strand, 16001138 - 16001230
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcatt-agcttaattcccctataattcgcgcaattttgtatatc 964  Q
    ||||||||||||| ||  |||||||||||||| |||||||| |||||||||||| |  ||||||| |||||||||| ||||||| ||||||||    
T  16001138 tttcttagtcttcgttaaatcaccctttcccataacttcatagtatgactcattaattttaattctcctataattcacgcaattatgtatatc 16001230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 898 - 970
Target Start/End: Complemental strand, 56224824 - 56224752
Alignment:
Q  898 tttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatccccctt 970  Q
    |||||||||||||||||  |||||||||||| |||||||| ||||||||  | ||||||||||||||| ||||    
T  56224824 tttcccacaacttcatgacatgactcattagtttaattcctctataatttacacaattttgtatatcctcctt 56224752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 873 - 951
Target Start/End: Complemental strand, 39707551 - 39707472
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttccc-acaacttcatggtatgactcattagcttaattcccctataattcgcgc 951  Q
    ||||||||||||| ||  |||||| ||| || | ||||||||||||||||||||||| |||||||| |||||||| ||||    
T  39707551 tttcttagtcttcgttcaatcacctttttcctataacttcatggtatgactcattagtttaattcctctataattggcgc 39707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 872 - 913
Target Start/End: Complemental strand, 53703696 - 53703655
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcat 913  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  53703696 ctttcttagtcttctttcgatcaccctttcccataacttcat 53703655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 872 - 1002
Target Start/End: Complemental strand, 36544239 - 36544107
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36544239 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctatgattcgcgcaattttgtatatcccccttg 36544140  T
Q  972 t--ctatagattggaa-taaagtggcttcttctc 1002  Q
    |   |||||||||||| |||||| ||||||||||    
T  36544139 ttcttatagattggaattaaagt-gcttcttctc 36544107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 873 - 1002
Target Start/End: Original strand, 15216465 - 15216596
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    |||||||||||||  |  || |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  15216465 tttcttagtcttcgctcaattaccctttcgcataacttcatggtatgactcattagcttaattcccctataattcgtgcaatgttgtatatccaccttgt 15216564  T
Q  973 --ctatagattggaataaagtggcttcttctc 1002  Q
       ||||||||||||| |||  ||||||||||    
T  15216565 tcttatagattggaattaaggtgcttcttctc 15216596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 896 - 933
Target Start/End: Original strand, 42855234 - 42855271
Alignment:
Q  896 cctttcccacaacttcatggtatgactcattagcttaa 933  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  42855234 cctttcccataacttcatggtatgactcattagcttaa 42855271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 911 - 972
Target Start/End: Complemental strand, 3284744 - 3284684
Alignment:
Q  911 catggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    |||||||||| |||| ||||||||  |||||||||| | ||||||||||||||||| |||||    
T  3284744 catggtatgattcat-agcttaatctccctataatttgtgcaattttgtatatcccacttgt 3284684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 1e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 872 - 1002
Target Start/End: Complemental strand, 6082476 - 6082344
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6082476 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatgccccttg 6082377  T
Q  972 t--ctatagattggaa-taaagtggcttcttctc 1002  Q
    |   |||||||||||| |||||| ||||||||||    
T  6082376 ttcttatagattggaattaaagt-gcttcttctc 6082344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 874 - 972
Target Start/End: Original strand, 20428834 - 20428932
Alignment:
Q  874 ttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    |||||||||||| ||  || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  20428834 ttcttagtcttcgttcaattaccctttcccataacttcatggtatgactcattagcttaattcccttataattcgcgcaatgttgtatatcccccttgt 20428932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 894 - 986
Target Start/End: Original strand, 5260465 - 5260559
Alignment:
Q  894 accctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt--ctatagattggaat 986  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||   |||||||||||||    
T  5260465 accctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcattgttgtatatcccccttgttcttatagattggaat 5260559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 873 - 971
Target Start/End: Complemental strand, 30669981 - 30669883
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||| ||  |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  30669981 tttcttagtcttcgttcaatcatcctttgccataacttcatggtatgactcattagcttaattcccctataatttgcgcatttttgtatatcccacttg 30669883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 906 - 972
Target Start/End: Complemental strand, 26290837 - 26290771
Alignment:
Q  906 aacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    ||||| |||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||    
T  26290837 aactttatggtatgactcataaggttaattcccctatcattcgcacaattttgtatatcccccttgt 26290771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 929 - 1010
Target Start/End: Complemental strand, 9705828 - 9705744
Alignment:
Q  929 cttaattcccctataattcgcgcaattttgtatatcccccttgt--ctatagattggaataaagtggcttcttct-cactcgtcg 1010  Q
    |||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||| |||  ||||||||| |||||||||    
T  9705828 cttaattcccctataattcgcgcaatgttgtatatcccccttgttcttatagattggaattaaggtgcttcttctccactcgtcg 9705744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 873 - 970
Target Start/End: Complemental strand, 30243845 - 30243749
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatccccctt 970  Q
    ||||||||||||| ||| |||||| ||| ||| |||||||||| ||||||||| || | |||||| ||| |||| || |||||||| |||| ||||||    
T  30243845 tttcttagtcttcatttaatcaccattt-ccataacttcatgggatgactcataagttgaattcctctaaaatttgcacaattttgaatatgcccctt 30243749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 913 - 970
Target Start/End: Complemental strand, 3629312 - 3629255
Alignment:
Q  913 tggtatgactcattagcttaattcccctataattcgcgcaattttgtatatccccctt 970  Q
    |||||||||||||    |||||||||||||||||   |||||||||||||||||||||    
T  3629312 tggtatgactcatacatttaattcccctataatttttgcaattttgtatatccccctt 3629255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 6e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 872 - 986
Target Start/End: Complemental strand, 24177611 - 24177495
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24177611 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcacgcaattttgtatatcccccttg 24177512  T
Q  972 t--ctatagattggaat 986  Q
    |   |||||||||||||    
T  24177511 ttcttatagattggaat 24177495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 872 - 1002
Target Start/End: Original strand, 2076669 - 2076801
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  2076669 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcgttagcttaattcccctataattcgcgcaattttgtatgtcccccttg 2076768  T
Q  972 t--ctatagattggaa-taaagtggcttcttctc 1002  Q
    |   |||||||||||| |||||| ||||||||||    
T  2076769 ttcttatagattggaattaaagt-gcttcttctc 2076801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 872 - 1002
Target Start/End: Original strand, 1288723 - 1288855
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  1288723 ctttcttagtcttctttcgatcaccctttcccatagcttcatggtatgactcattaacttaattcccctataattcgcacaattttgtatatcccccttg 1288822  T
Q  972 t--ctatagattggaa-taaagtggcttcttctc 1002  Q
    |   |||||||||||| |||||| ||||||||||    
T  1288823 ttcttatagattggaattaaagt-gcttcttctc 1288855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 872 - 1002
Target Start/End: Complemental strand, 20318078 - 20317946
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  20318078 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattccctaataatttgcgcaattttgtatatcccccttg 20317979  T
Q  972 t--ctatagattggaa-taaagtggcttcttctc 1002  Q
    |   |||||||||||| |||||| ||||||||||    
T  20317978 ttcttatagattggaattaaagt-gcttcttctc 20317946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 874 - 944
Target Start/End: Original strand, 22832091 - 22832161
Alignment:
Q  874 ttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataa 944  Q
    |||||||||||| ||  |||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  22832091 ttcttagtcttcattcaatcactttttcccataacttcatggtatgactcattagcttaattcccctataa 22832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 907 - 972
Target Start/End: Complemental strand, 27011 - 26946
Alignment:
Q  907 acttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    |||||||||||||||||||||  |||||||||||||||||||  ||||||||||||||| ||||||    
T  27011 acttcatggtatgactcattaatttaattcccctataattcgaacaattttgtatatcctccttgt 26946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 907 - 972
Target Start/End: Complemental strand, 17212321 - 17212257
Alignment:
Q  907 acttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    |||||||||||| |||||| || ||||  ||| ||||||| || ||||||||||||||||||||||    
T  17212321 acttcatggtataactcataagtttaac-cccttataatttgcacaattttgtatatcccccttgt 17212257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 4e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 872 - 1002
Target Start/End: Complemental strand, 8179880 - 8179748
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  8179880 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgacttattagcttaattcccctataattcgcgcaattttgtatatcctccttg 8179781  T
Q  972 t--ctatagattggaa-taaagtggcttcttctc 1002  Q
    |   |||||||||||| |||||| ||||||||||    
T  8179780 ttcttatagattggaattaaagt-gcttcttctc 8179748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 891 - 986
Target Start/End: Original strand, 24584823 - 24584920
Alignment:
Q  891 atcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt--ctatagattggaat 986  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||   |||||||||||||    
T  24584823 atcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgtgcaattttgtatatcccctttgttcttatagattggaat 24584920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 873 - 972
Target Start/End: Complemental strand, 13148408 - 13148309
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    ||||||||||||| ||  |||||||||||||| |||||||||||| |||||||||| |||||||||||||||| |  |||||||||||||||||| ||||    
T  13148408 tttcttagtcttcattcaatcaccctttcccataacttcatggtaagactcattagtttaattcccctataatccaagcaattttgtatatcccctttgt 13148309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 872 - 946
Target Start/End: Original strand, 452811 - 452885
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataatt 946  Q
    ||||||||||||||||| |||||||||||| |  |||||||||||||||||||||||||||||||||||||||||    
T  452811 ctttcttagtcttctttcgatcaccctttctcgtaacttcatggtatgactcattagcttaattcccctataatt 452885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 873 - 952
Target Start/End: Original strand, 45368822 - 45368901
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgca 952  Q
    ||||||||||||| ||  || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  45368822 tttcttagtcttcgttcaattaccctttcccataatttcatggtatgactcattagcttaattcccctataattcgcgca 45368901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 906 - 967
Target Start/End: Complemental strand, 37281159 - 37281098
Alignment:
Q  906 aacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccc 967  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  37281159 aacttcatggtatgattcattagtttaattctcctataattcgcgcaattttgtatatcccc 37281098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 4e-41; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 872 - 1002
Target Start/End: Original strand, 51441959 - 51442091
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  51441959 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgtgattttgtatatcccccttg 51442058  T
Q  972 t--ctatagattggaa-taaagtggcttcttctc 1002  Q
    |   |||||||||||| |||||| ||||||||||    
T  51442059 ttcttatagattggaattaaagt-gcttcttctc 51442091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 872 - 972
Target Start/End: Original strand, 43241576 - 43241676
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  43241576 ctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccttataattcacgcaattttgtatatcccccttg 43241675  T
Q  972 t 972  Q
    |    
T  43241676 t 43241676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 872 - 972
Target Start/End: Complemental strand, 8671005 - 8670905
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    |||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8671005 ctttcttagttttctttccatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcagttttgtatatcccccttg 8670906  T
Q  972 t 972  Q
    |    
T  8670905 t 8670905  T

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Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 872 - 1002
Target Start/End: Original strand, 49348597 - 49348728
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  49348597 ctttcttagtcttctttcgatcaccctttcccatgacttcatggtatgactcattagcttaattctcctataattcgcgcaattttgtata-cccccttg 49348695  T
Q  972 t--ctatagattggaa-taaagtggcttcttctc 1002  Q
    |   |||||||||||| |||||| ||||||||||    
T  49348696 ttcttatagattggaattaaagt-gcttcttctc 49348728  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 891 - 964
Target Start/End: Original strand, 32405674 - 32405747
Alignment:
Q  891 atcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatc 964  Q
    |||||| ||||||| |||||||||||||||||||| || |||||| |||||||||| || ||||||||||||||    
T  32405674 atcaccttttcccataacttcatggtatgactcataaggttaatttccctataatttgcacaattttgtatatc 32405747  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 873 - 947
Target Start/End: Complemental strand, 11681907 - 11681833
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattc 947  Q
    |||||||||||||  |  |||||||||||||| || || |||||||||||| |||||||||||||||||||||||    
T  11681907 tttcttagtcttcgctcaatcaccctttcccataatttgatggtatgactctttagcttaattcccctataattc 11681833  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 965
Target Start/End: Original strand, 29173725 - 29173819
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccc--tataattcgcgcaattttgtatatcc 965  Q
    ||||||||| ||| ||  |||| |||||| || ||||| || ||| |||||||||| ||||||||||  |||||||| |||||||| ||||||||    
T  29173725 tttcttagttttcgttcaatcatcctttcgcataacttgattgtacgactcattagtttaattcccctatataattcacgcaatttcgtatatcc 29173819  T

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Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 872 - 986
Target Start/End: Original strand, 51448904 - 51449020
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttg 971  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51448904 ctttcttagtcttctttcgatcaccctttcccataactttatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatccctcttg 51449003  T
Q  972 t--ctatagattggaat 986  Q
    |   |||||||||||||    
T  51449004 ttcttatagattggaat 51449020  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 872 - 963
Target Start/End: Complemental strand, 52137915 - 52137824
Alignment:
Q  872 ctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatat 963  Q
    |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52137915 ctttctgagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcacaattttgtatat 52137824  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 873 - 986
Target Start/End: Complemental strand, 38849188 - 38849073
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt 972  Q
    |||||||| |||| ||  ||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  38849188 tttcttagccttcgttcaatcactctttcccataacttcatggtatgactcattagtttaattcccttataattcgcgcaattttgtatatcccccttgt 38849089  T
Q  973 --ctatagattggaat 986  Q
       |||||||||||||    
T  38849088 tcttatagattggaat 38849073  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 873 - 965
Target Start/End: Complemental strand, 3368849 - 3368757
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcc 965  Q
    ||||||||||||| ||  |||||  ||||||| ||||||||||||||| | || || |||||||  ||||||||| | |||||||||||||||    
T  3368849 tttcttagtcttcgttcaatcacattttcccataacttcatggtatgaattataagtttaattcttctataattcacacaattttgtatatcc 3368757  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 873 - 957
Target Start/End: Complemental strand, 27916664 - 27916580
Alignment:
Q  873 tttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaatttt 957  Q
    ||||||| ||||| ||  ||||||||||| || |||||||||||||||||||| |  |||  ||||||||||||| |||||||||    
T  27916664 tttcttattcttcgttcaatcaccctttctcataacttcatggtatgactcatcaatttatatcccctataattcacgcaatttt 27916580  T

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Target: scaffold0113 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 875 - 963
Target Start/End: Original strand, 13456 - 13544
Alignment:
Q  875 tcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatat 963  Q
    ||||||||||| ||  |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  13456 tcttagtcttcgttcaatcaccatttcccataacttcatggtatgactcattagcttaattcccctataattcgcgtagttttgtatat 13544  T

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Target: scaffold0083 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 891 - 986
Target Start/End: Complemental strand, 52239 - 52142
Alignment:
Q  891 atcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgt--ctatagattggaat 986  Q
    ||||||||||| || ||||||| ||||| |||||||| ||||||||| ||||||||  ||||||| ||||||| ||||||||   |||||||||||||    
T  52239 atcaccctttctcataacttcacggtataactcattaacttaattcctctataatttacgcaattctgtatattccccttgttcatatagattggaat 52142  T

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