View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0357-Insertion-4 (Length: 704)
Name: NF0357-Insertion-4
Description: NF0357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0357-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 686
Target Start/End: Original strand, 9542825 - 9543510
Alignment:
| Q |
8 |
cacagttctgtaactcatgttgatatttgtgagatagataaaatggttattgatgtaagttatggaagnnnnnnnnnngtgatttattccaaatcataga |
107 |
Q |
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| T |
9542825 |
cacagttctgtaactcatgttgatatttgtgagatagataaaatggttattgatgtaagttatggaagaaaaaaaaatgttattttttccaaatcataga |
9542924 |
T |
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| Q |
108 |
aattattttctaaatgtgaaaaactcattgccattgatcattcattaggtttcaaagaagtactttccagagttagctattggatttgaagattctagag |
207 |
Q |
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| T |
9542925 |
aattattttctaaatgtgaaaaactcattgccattgatcattcattaggtttctaagaagtactttccagagttagctgttggatttgaagatcctagag |
9543024 |
T |
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| Q |
208 |
tacacctgcatgttggtgatggtatctattcctacttgctattgtcatcaatatttgagttttcttactaaaaaagttatttgatttttcaattctatgt |
307 |
Q |
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| T |
9543025 |
tacacctgcatgttggtgatggtatctattcctacttgctattgtca---atatttgagttttcttactaaaaaagttatttgatttttcaattctatgt |
9543121 |
T |
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| Q |
308 |
cttatattataaatattttgatgttgtttctgttcaaatttgttcagctgttgaatttcttagattcactcctgaaggaaagtatgatgctataattgtt |
407 |
Q |
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| T |
9543122 |
cttatattataaatattttgatgttgtttctgttcaaatttgttcagctgttgaatttcttagattcactcctgaaggaaagtatgatgctataattgtt |
9543221 |
T |
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| Q |
408 |
gattcctctgatccagttggtatgtcattgtcatttta----------ttatatcaaagaaatattatatcctaaggtgataatttagtttgttatgttt |
497 |
Q |
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| T |
9543222 |
gattcctctgatccagttggtatgtcattgtcattttattatcattgtttatatcaaagaaatattatatcctaaggtgataatttagtttcttatgttt |
9543321 |
T |
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| Q |
498 |
gatgaatgattagttatatacattaagcacaattttgctttggatttcatcaaaagctataatatcctaaagtttcctcatacttatttttgggctacat |
597 |
Q |
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| T |
9543322 |
gatgaatgattagttatatacattaagcacaattttgctttggatttcatcaaaagctataatatcctaaagtttcctcatacttatttttgggctacat |
9543421 |
T |
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| Q |
598 |
ttctcttttaaatcatcaactaaaatgaaaaattaaattagtattttaaaataacaaaggatcaaaatgacttataacctaggtagcac |
686 |
Q |
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| T |
9543422 |
ttctcttttaaatcatcaactaaaatgaaaaattaaagtagtattttaaaataacaaaggatcaaaatgacttataacctacgtagcac |
9543510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 41401040 - 41400996
Alignment:
| Q |
27 |
ttgatatttgtgagatagataaaatggttattgatgtaagttatg |
71 |
Q |
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| T |
41401040 |
ttgatatatgtgagatagataagatggttattgatgtaagttatg |
41400996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 41400936 - 41400857
Alignment:
| Q |
153 |
taggtttcaaagaagtactttccagagttagctattggatttgaagattctagagtacacctgcatgttggtgatggtat |
232 |
Q |
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| T |
41400936 |
taggtttctaggaagttttttccagagttagctgttgggtttgacgatcctcgtgtacacttgcatgttggtgatggtat |
41400857 |
T |
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