View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0357-Insertion-5 (Length: 680)
Name: NF0357-Insertion-5
Description: NF0357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0357-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 28986720 - 28986939
Alignment:
| Q |
7 |
aataacgacagggctatgttaatgttttgtgaatttagttttcacaatatgggcaattctagttctaggccataatagtgtgtctcatgttggtgcgttt |
106 |
Q |
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| T |
28986720 |
aataacgacagggctatgttaatgttttgtgaatttagttttcacaatatgggcaattctagttctaggccacaatagtgtgtctcatgttggtgcgttt |
28986819 |
T |
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| Q |
107 |
gaaatagcacttgttgaaaactttcaaacctttaaatttcagtaccaatcgcaagacaagtcacaccctaatttaggcccaccaatttagagttatgttc |
206 |
Q |
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| T |
28986820 |
gaaatagcacttgttgaaaactttcaaacctttaaatttcagtaccaatcacaagacaagtcacaccctaatttaggcccaccaatttagagttatgttc |
28986919 |
T |
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| Q |
207 |
aagttcctctagtttctaag |
226 |
Q |
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|||||||||||||||||||| |
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| T |
28986920 |
aagttcctctagtttctaag |
28986939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 377 - 664
Target Start/End: Original strand, 28987131 - 28987408
Alignment:
| Q |
377 |
actcaatttggttgactcttttcacatgtgacctccgggagaccaatgcttaaaaaccattcaaaatttcgacgtcaatcaatgtcaatcaatggtatca |
476 |
Q |
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| T |
28987131 |
actcaatttggttgactcttttcacatgtgacctccgggagatcaatgcttaaaaatcactcaaaatttcgacgtca----------atcaatggtatca |
28987220 |
T |
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| Q |
477 |
tcgtaatcaattacatatatattttcaagttttcattaatattttcatatgttgcacatcatacactattcgtcccccaataatgatgagaaatctatca |
576 |
Q |
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| T |
28987221 |
tcgtaatcaattacatatatattttcaagttttcattaatatcttcatatgttgcacatcatacactattcgt-cccaaataatgatgagaaatctatca |
28987319 |
T |
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| Q |
577 |
tatttagacgat-gaccaatatatttgatgcaaaatatacgatttaatatactacaaattgcctattaggtatgacaagactcgattac |
664 |
Q |
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| T |
28987320 |
tatttagacgataaagtaatatatttgatgcaaaatataagatttaatatactaaaaattaactattaggtatgacaagaatcgattac |
28987408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 28967848 - 28968018
Alignment:
| Q |
7 |
aataacgacagggctatgttaatgttttgtgaattta---gttttcacaatatgggcaattctagttctaggccataatagtgtgtctcatgttggtgcg |
103 |
Q |
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| T |
28967848 |
aataacgacagggctatgttaatgttttgtgaattaattggttttcacaata-gggctattctatttctaggccatagtaatgtgtctcatgttggtgcg |
28967946 |
T |
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| Q |
104 |
tttgaaatagcacttgttgaaaactttcaaacctttaaatttcagtaccaatcgcaagacaagtcacaccct |
175 |
Q |
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| T |
28967947 |
tttggaataaaatttgttgaaaaaattcaaacatttccatttcagtatcaatcacaagacaattaacaccct |
28968018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 286 - 379
Target Start/End: Original strand, 28986995 - 28987088
Alignment:
| Q |
286 |
cactcaacctcatacttaatattatattaagtgtacaactttaaatctatttggattggtatggtggcattgctttgagatcttggagcgtact |
379 |
Q |
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| T |
28986995 |
cactcaagctcatacttaatattatattaagtgtacaactttaaatctatttggattggtatggtggtgttattttgagattttggagcgtact |
28987088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 28945110 - 28945203
Alignment:
| Q |
7 |
aataacgacagggctatgttaatgttttgtgaatttagttttcacaatatgggcaattctagttctaggccataatagtgtgtctcatgttggtgcgttt |
106 |
Q |
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| T |
28945110 |
aataacgacagggctatgctaatgttttgtgaatttagattttacaata-gggcta------ttctagggcataatattgtgtcgcatgttggtgcgttt |
28945202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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