View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0357-Insertion-7 (Length: 557)

Name: NF0357-Insertion-7
Description: NF0357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0357-Insertion-7
NF0357-Insertion-7
[»] chr4 (1 HSPs)
chr4 (7-557)||(41215572-41216124)


Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 7 - 557
Target Start/End: Complemental strand, 41216124 - 41215572
Alignment:
Q  7 attgggtgactctcttaattgagtgtgtttcagctaatttgacaaatataacaaacgatttgaagttgaacttgtcgagtgaagtaatcctagaaaggag 106  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41216124 attgggtgactctcttaattgaatgtgtttcagctaatttgacaaatataacaaacgatttgaagttgaacttgtcgagtgaagtaatcccagaaaggag 41216025  T
Q  107 tttactaacagctgtacacacacgaattgtcatcaatagttttccttttgtttttcactttacggggcaaaaacattacttgttttacatctaatttttc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  41216024 tttactaacagctgtacacacacgaattgtcatcaatagttttccatttgtttttccctttacggggcaaaatcattacttgttttacatctaatttttc 41215925  T
Q  207 aacaacactggggtgtatgaaatatctattgtcgctacttttaacttgcattcacatttaaacataatatttgaagtgaaatggaaaagaaacatttgga 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41215924 aacaacactggggtgtatgaagtatctattgtcgctacttttaacttgcattcacatttaaacataatatttgaagtgaaatggaaaagaaacatttgga 41215825  T
Q  307 aaaccaaaggaaggcaataactatatctgattcccgaatagaaatggcggcgctataaaatcagcaagtctgacataactataaggatgagatagtgaga 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41215824 aaaccaaaggaaggcaataactatatctgattcccgaatagaaatggcggcgctataaaatcagcaagtctgacataactataaggatgagatagtgaga 41215725  T
Q  407 aagaggatatattgactc--aaactgtgaactgaaaagagaatgccaacaccacaaatccactgcataatcatcaatgcaattgtaacagcatgtcagca 504  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41215724 aagaggatatattgactcagaaactgtgaactgaaaagagaatgccaacaccacaaatccactgcataatcatcaatgcaattgtaacagcatgtcaaca 41215625  T
Q  505 accatacccatggcttctttctctcctctcactcgaatctcgaccactcattc 557  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  41215624 accatacccatggcttctttctctcctctcacttgaatctcaaccactcattc 41215572  T

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