View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0357_high_3 (Length: 251)
Name: NF0357_high_3
Description: NF0357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0357_high_3 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 27594 - 27793
Alignment:
| Q |
18 |
taagtctatatggtgtctttgtaagctgtctcattaactgatgtagaatcaataacacatttttggaggatttctatttgtgtttttggatttgggagtg |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
27594 |
taagtctatattgtgtctttgtaagctgtctcattaattgatgtagaatcaataacacatttgtggaggatttctatttgtgtttttggatttggaagtg |
27693 |
T |
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| Q |
118 |
agagaggaatgacataagtttaacttctaagttaatgtcagaagagcaaaattggcttctatgtgactatcaggtttactttggaagaaaagtaatggta |
217 |
Q |
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| T |
27694 |
agagaggaatgacat--gtttaacttttaaattaatgtcagaggagcaaaattggcttctatgtgactagcaggtttactttgaaagaaaagtaatggta |
27791 |
T |
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Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 13795907 - 13796106
Alignment:
| Q |
18 |
taagtctatatggtgtctttgtaagctgtctcattaactgatgtagaatcaataacacatttttggaggatttctatttgtgtttttggatttgggagtg |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
13795907 |
taagtctatattgtgtctttgtaagctgtctcattaactgatgtagaatcaatagcacatttgtggaggatttctatttgtgcttttggatttgggagtg |
13796006 |
T |
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| Q |
118 |
agagaggaatgacataagtttaacttctaagttaatgtcagaagagcaaaattggcttctatgtgactatcaggtttactttggaagaaaagtaatggta |
217 |
Q |
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| T |
13796007 |
agagaggaatgacat--gtttaacttttaagttaatgtcaaaggagcaaaattggcttctatgtgactagcaggtttactttgaaagaaaagtaatggta |
13796104 |
T |
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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 35430761 - 35430891
Alignment:
| Q |
18 |
taagtctatatggtgtctttgtaagctgtctcattaactgatgtagaatcaataacacatttttggaggatttctatttgtgtttttggatttgggagtg |
117 |
Q |
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|||||| |||| |||||||||||||||| || ||||||||||||||||| ||||||| | |||| | ||| |||||| | |||| ||||||||||| |
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| T |
35430761 |
taagtccatattgtgtctttgtaagctgactaattaactgatgtagaataaataacatactttt-gtgga---gcatttgtatatttgaatttgggagtg |
35430856 |
T |
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| Q |
118 |
agagaggaatgacataagtttaacttctaagttaa |
152 |
Q |
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| T |
35430857 |
agagaggaatggcatatgcttaacttctaagttaa |
35430891 |
T |
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