View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0357_low_2 (Length: 414)
Name: NF0357_low_2
Description: NF0357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0357_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 7173739 - 7173364
Alignment:
| Q |
30 |
aaaaccgtgtgatgttgggatgtctgaagcaacatgaagacaaagtttcttgaactacagttagagtggctatttctgtcaaatgcaaagaattgtaatt |
129 |
Q |
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| T |
7173739 |
aaaaccgtgtgatgttgggatgtctgaagcaacatgaagacaaagtttcttgaactacagttagagtggctatttctgtcaaatgcaaagaattgtaatt |
7173640 |
T |
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| Q |
130 |
ctacactattctacattgttccccaccatcataacagtaatatgttttctctctttctcactgannnnnnnn--gctgttatttgactattttatcgttg |
227 |
Q |
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| T |
7173639 |
ctacactattctacattgttccccaccatcataacagtaatatgttttctctctttctcactgatttttcttttgctgttatttgactattttatcgttg |
7173540 |
T |
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| Q |
228 |
ttttctatgcttaagctggatttagttgtttaatgccgctttcattccgcatttgaactttatccgaggaagtgctagtttcaataggctacactgattt |
327 |
Q |
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| T |
7173539 |
ttttctatgcttaagctggatttagttgtttaatgccgctttcattccgcatttgaactttatccgaggaagtgctagtttcaatagcctacactgattt |
7173440 |
T |
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| Q |
328 |
tattcaaatgaatatttattcacatttatcttatgagtagcagttgatttgcttgaaaagattaattctttttcat |
403 |
Q |
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| T |
7173439 |
tattcaaatgaatatttattcacatttatcttatgagtagcagttgatttgcttgaaaagattaattctttttcat |
7173364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 7166995 - 7166914
Alignment:
| Q |
99 |
ctatttctgtcaaatgcaaagaattgtaattctacactattctacattgttcc-ccaccatcataacagtaatatgttttct |
179 |
Q |
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| T |
7166995 |
ctatttctgtcaaatgaaaagaattgtgattctagactgctctacattgttcctgcaccatcctaatagcaatatgttttct |
7166914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 349
Target Start/End: Complemental strand, 7168051 - 7167915
Alignment:
| Q |
215 |
tattttatcgttgttttctatgcttaagctggatttagttgtttaatgccgctttcattccgcatttgaactttatccgaggaagtgctagtttcaatag |
314 |
Q |
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| T |
7168051 |
tattttatcactgttttctatacttaagttggatttcattatttaatggcgctttcgttctgactttgaatcctttacgaggaagtgccaggttcaatag |
7167952 |
T |
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| Q |
315 |
gctacactg--attttattcaaatgaatatttattca |
349 |
Q |
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| T |
7167951 |
ccaacaatgtaattttattcaaatgaatatttattca |
7167915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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