View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0357_low_3 (Length: 388)

Name: NF0357_low_3
Description: NF0357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0357_low_3
NF0357_low_3
[»] chr8 (1 HSPs)
chr8 (11-359)||(6472770-6473120)
[»] chr6 (2 HSPs)
chr6 (131-359)||(13608528-13608756)
chr6 (11-98)||(13608867-13608954)
[»] chr4 (5 HSPs)
chr4 (129-359)||(31244507-31244738)
chr4 (59-100)||(31244823-31244864)
chr4 (194-247)||(31150836-31150889)
chr4 (174-247)||(31496522-31496595)
chr4 (192-244)||(31159732-31159784)
[»] chr7 (1 HSPs)
chr7 (130-359)||(14724016-14724251)
[»] chr5 (1 HSPs)
chr5 (130-359)||(17599599-17599834)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 6472770 - 6473120
Alignment:
Q  11 cagagaatagaaattccaaattatcacttgaaaaccacgaacataaataacaaagattaattgataaaacaattcaagaaccaaaaattaattgaaaagt 110  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6472770 cagagaatagaaattccaaatcatcacatgaaaaccacgaacataaataacaaagattaattgataaaacaattcaagagccaaaaattaattgaaaagt 6472869  T
Q  111 tcagtgaaattttgttagtataaacttaaaagtgttgatca--acttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagag 208  Q
    ||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472870 tcattgaaattttgttagtataaacttaaaagtgttgatcacaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagag 6472969  T
Q  209 attggctacttgtgttagggctcccctccatctttgcactgcctctaagtttcctttgaatctttctccatgctcaagaaagggtttttcataatctccg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472970 attggctacttgtgttagggctcccctccatctttgcactgcctctaagtttcctttgaatctttctccatgctcaagaaagggtttttcataatctccg 6473069  T
Q  309 gtttgttttcgtacctcagatggactcacatcatagaaaataggtagaaca 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473070 gtttgttttcgtacctcagatggactcacatcatagaaaataggtagaaca 6473120  T

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Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 131 - 359
Target Start/End: Complemental strand, 13608756 - 13608528
Alignment:
Q  131 taaacttaaaagtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggct 230  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13608756 taaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggct 13608657  T
Q  231 cccctccatctttgcactgcctctaagtttcctttgaatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcagatg 330  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| ||||||   |||||| |||||||||||||||| |||| ||||||||| ||||||    
T  13608656 cccctccatctttgcacttcctctaagttttctttgaatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatg 13608557  T
Q  331 gactcacatcatagaaaataggtagaaca 359  Q
    ||||| |||||||||||||||||||||||    
T  13608556 gactcgcatcatagaaaataggtagaaca 13608528  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 13608954 - 13608867
Alignment:
Q  11 cagagaatagaaattccaaattatcacttgaaaaccacgaacataaataacaaagattaattgataaaacaattcaagaaccaaaaat 98  Q
    ||||| ||||||||||||||| ||||| ||| |||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||    
T  13608954 cagaggatagaaattccaaatcatcacatgacaaccacaaacaaaaacaacaaagattaattgataaaacaatccaagaaccaaaaat 13608867  T

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Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 129 - 359
Target Start/End: Complemental strand, 31244738 - 31244507
Alignment:
Q  129 tataaacttaaaa-gtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagg 227  Q
    ||||||||||||| ||  ||||| |||||  |||||||||||||| |||||||||| |||| ||| ||||||||||||||| | ||||||||||| ||||    
T  31244738 tataaacttaaaaagttatgatcgacttgttgcaaacatagaaaagactacttactgatcccttacatcccaaccagagagttcggctacttgtgctagg 31244639  T
Q  228 gctcccctccatctttgcactgcctctaagtttcctttgaatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcag 327  Q
    ||||| |||||||||||||||  |||||| |||||||||||||||||| |||| ||   ||||| |||||||||||||||| |||| ||||| |||||||    
T  31244638 gctcctctccatctttgcactttctctaaatttcctttgaatctttcttcatgatccctaaaggctttttcataatctccgctttgctttcgcacctcag 31244539  T
Q  328 atggactcacatcatagaaaataggtagaaca 359  Q
    |||||  |||||||||||||||||||||||||    
T  31244538 atggatccacatcatagaaaataggtagaaca 31244507  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 31244864 - 31244823
Alignment:
Q  59 aacaaagattaattgataaaacaattcaagaaccaaaaatta 100  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  31244864 aacaaaaattaattgataaaacaattcaagaaccaaaaatta 31244823  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 31150836 - 31150889
Alignment:
Q  194 atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac 247  Q
    |||||| |||||||||||||| |||||||| || ||| ||||||||||||||||    
T  31150836 atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcac 31150889  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 31496595 - 31496522
Alignment:
Q  174 actacttacttatcctttatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac 247  Q
    |||| ||||||||| | || |||||||||||||||||  || |||||| |||| ||| ||||||||||||||||    
T  31496595 actatttacttatcatgtagatcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcac 31496522  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 31159732 - 31159784
Alignment:
Q  192 atatcccaaccagagagattggctacttgtgttagggctcccctccatctttg 244  Q
    ||||||||||||||||||||||| |||||||||||   | |||||||||||||    
T  31159732 atatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg 31159784  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 359
Target Start/End: Complemental strand, 14724251 - 14724016
Alignment:
Q  130 ataaacttaaaagtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggc 229  Q
    ||||||||||||| |||||| | ||||  || |||||||||||||| ||||||| ||||||||||| ||| ||  || ||||||||||||||| || |||    
T  14724251 ataaacttaaaagcgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagcc--agggattggctacttgtgctaaggc 14724154  T
Q  230 tcccctccatctttgcactgcctctaagtttcctttgaatctttc--------tccatgctcaagaaagggtttttcataatctccggtttgttttcgta 321  Q
    |||||||||| ||||||   ||||||| ||| ||||||||||| |        | ||||||   |||| | ||||||||||| |||| |||  |||||||    
T  14724153 tcccctccatatttgcaaatcctctaaattttctttgaatcttgcttcattgattcatgcttctgaaaagctttttcataatttccgtttttctttcgta 14724054  T
Q  322 cctcagatggactcacatcatagaaaataggtagaaca 359  Q
    |||||||||||||| | |||||||||||||||||||||    
T  14724053 cctcagatggactcccgtcatagaaaataggtagaaca 14724016  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 359
Target Start/End: Original strand, 17599599 - 17599834
Alignment:
Q  130 ataaacttaaaagtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggc 229  Q
    |||||||||||||||||||| | ||||  || |||||||||||||| ||||||| ||||||||||| ||| ||  || ||||||||||||| |||| |||    
T  17599599 ataaacttaaaagtgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagcc--agggattggctacttgagttaaggc 17599696  T
Q  230 tcccctccatctttgcactgcctctaagtttcctttgaatctttc--------tccatgctcaagaaagggtttttcataatctccggtttgttttcgta 321  Q
     ||||||||| ||||||   ||||||| ||| ||||||||||| |        | ||||||   |||| | ||||||||||| |||| |||  |||||||    
T  17599697 acccctccatatttgcaaatcctctaaattttctttgaatcttgcttcattgattcatgcttctgaaaagctttttcataatttccgtttttctttcgta 17599796  T
Q  322 cctcagatggactcacatcatagaaaataggtagaaca 359  Q
    |||||||||||||| | |||||||||||||||||||||    
T  17599797 cctcagatggactcccgtcatagaaaataggtagaaca 17599834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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