View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_high_1 (Length: 490)
Name: NF0358_high_1
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 30 - 490
Target Start/End: Original strand, 3989897 - 3990357
Alignment:
| Q |
30 |
aaaacccgtcatcattctttaaaattagtacgtgttacttacagtttaaatgcgaattattcgcaaactacagcgaagtttactctttttgtgtggctag |
129 |
Q |
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| T |
3989897 |
aaaacccgtcatcattctttaaaattagtacgtgttacttacagtttaaatgcgaattattcgcaaactacagcgaagtttactctttttgtgtggctag |
3989996 |
T |
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| Q |
130 |
ttgtttagatgaagagtatagtctcaagatttatttctatattccttttccccaggagcggaaagagtacttaccttcaacaagtgtgtctcatagttat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3989997 |
ttgtttagatgaagagtatagtctcaagatttatttctatattccttttccccaggagcggaaagagtacttaccttcaacaagtgtgtctcatagttat |
3990096 |
T |
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| Q |
230 |
cattgctcaagttgggtgttacgttcctgcccgcttctcaactcttagggtagttgaccgtgttttcacaaggatgggtgcagttgataatcttgaatca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990097 |
cattgctcaagttgggtgttacgttcctgcccgcttctcaactcttagggtagttgaccgtgttttcacaaggatgggtgcagttgataatcttgaatca |
3990196 |
T |
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| Q |
330 |
aactctagcacggtacaatttcttgatgcctgtgttttgaagctatttgattatgttcatatgtttataattatatatgaagttatctggaagtgtagtt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990197 |
aactctagcacggtacaatttcttgatgcctgtgttttgaagctatttgattctgttcatatgtttataattatatatgaagttatctggaagtgtagtt |
3990296 |
T |
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| Q |
430 |
catgacagagatgaaagagacagcttttatcatgcagaatgtttcagagaggtaacaccac |
490 |
Q |
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| T |
3990297 |
catgacagagatgaaagagacagcttttatcatgcagaatgtttcagagaggtaacaccac |
3990357 |
T |
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