View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0358_high_11 (Length: 263)
Name: NF0358_high_11
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 47480493 - 47480726
Alignment:
| Q |
1 |
agcatcaacagtgtcctgtgattcagcagaagccaaaataagctctggttcacttgcagattcacatgttccatcaattgcattgttcctccccaatgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47480493 |
agcatcaacagtgtcctgtgattcagcagaagccaaaataagctctggttcacttgcagattcacatgttccatcaattgcattgttcctccccaatgcc |
47480592 |
T |
|
| Q |
101 |
ttcaatgccaaatgtgcagctttctgtccagatatcatcattgccccaaatgttggaccctacaaaccaacaaaatcgttagcacatctcaatcaaatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47480593 |
ttcaatgccaaatgtgcagctttctgtcctgatatcatcattgccccaaatgttggaccctacaaaccaacaaaatcgttagcacatctcaatcaaatgt |
47480692 |
T |
|
| Q |
201 |
tccttatcatctccaaatagcatcaaaaccaacc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
47480693 |
tccttatcatctccaaatagcatcaaaaccaacc |
47480726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 31406614 - 31406673
Alignment:
| Q |
102 |
tcaatgccaaatgtgcagctttctgtccagatatcatcattgccccaaatgttggaccct |
161 |
Q |
| |
|
|||| |||||||| || || |||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
31406614 |
tcaaggccaaatgagctgccttctgtcctgaaatcatcattgctccaaatgttggaccct |
31406673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 697 times since January 2019
Visitors: 2783