View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_high_5 (Length: 355)
Name: NF0358_high_5
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 36523096 - 36522785
Alignment:
| Q |
15 |
aataaaatctacaaaacttctatatgaatttagtaatttacctctgagaaaggactaaccaatggatctaacttttgtggtcccaacaacactgatctac |
114 |
Q |
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| T |
36523096 |
aataaaatctacaaaacttctatatgaatttagtaatttacctctgagaaaggactaaccaatggatctaacttttgtggtcccaacaacactgatctac |
36522997 |
T |
|
| Q |
115 |
ataacctctcaactttgtctctttccttattgcttttcattgattccttcttgatccttgaaggagttaaatcattgatttcccaaagtgtagcagcaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36522996 |
ataacctctcaactttgtctctttccttattgcttttcattgattccttcttgatccttgaaggagttaaatcattgatttcccaaagtgtagcagcaag |
36522897 |
T |
|
| Q |
215 |
ttttctagcagacacagaaatttctttcttctctttgaagggtaatccagtacgtgaagaatgcaaagctgtgtttttcatagcatgatgatgatgagtt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
36522896 |
ttttctagcagacacagaaatttctttcttctctttgaagggtaatccagtacgtgaagaatgcaaagctgtctttttcatagcatggtgatgatgagtt |
36522797 |
T |
|
| Q |
315 |
gccatagaaggt |
326 |
Q |
| |
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|||||||||||| |
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| T |
36522796 |
gccatagaaggt |
36522785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 18972960 - 18973037
Alignment:
| Q |
157 |
attccttcttgatccttgaaggagttaaatcattgatttcccaaagtgtagcagcaagttttctagcagacacagaaa |
234 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||| | | |||||||||||||||||| || ||||||| |
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| T |
18972960 |
attccttcttgacccttgaaggatgcaaatcattgatttcccacaaagaagcagcaagttttctagctgaaacagaaa |
18973037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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