View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0358_low_1 (Length: 833)
Name: NF0358_low_1
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 245 - 799
Target Start/End: Complemental strand, 663956 - 663402
Alignment:
| Q |
245 |
tagcatgacatatccttattcaacccatacaatttcttaaatctttcactggtgaagaaaatcagccacaactttgatgagttttttgcccttatcagat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
663956 |
tagcatgacatatccttattcaacccatacaatttcttaaatctttcactggtgaagaaaatcagccacaactttgatgagttttttgcccttatcagat |
663857 |
T |
|
| Q |
345 |
tcaggatggaccatataataacaatgatcttcatcttcttcttcaaaaaattcaacttccccattccaatgactccctttcacagcttcataatacaaaa |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
663856 |
tcaggatggaccatataataacaatgatcttcatcttcttcttcaaaaaattcaacttccccattccaatgactccttttcacagcttcataatacaaaa |
663757 |
T |
|
| Q |
445 |
cagctctgtccctaaaacgatccttaccagcaacagtaacaagcattttagaacaaccaagtagagccaaattaggtgacattggacccaatggattcac |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
663756 |
cagctctgtccctaaaacgatccttaccagcaacagtaacaagcattttagaacaaccaagtaaagccaaattaggtgacattggacccaatggattcac |
663657 |
T |
|
| Q |
545 |
atttggatcatctattccaaaaggagcactagggtacacaaatttccaaagcaaagtagcaaattcatttaccttctcaaatttctcaactttttcaaac |
644 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
663656 |
atttggatcatctatcccaaaaggagcacgagggtacacaaatttccaaagcaaagtagcaaattcatttaccttctcaaatttctcaaccttttcaaac |
663557 |
T |
|
| Q |
645 |
cctaatggttttgaaccccnnnnnnntgtatggttcatataagcaccaaatattttaacaccattaggtattcttgtaacaccagcacgcatagcaatgt |
744 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
663556 |
cctaatggttttgaaccccaaaaaaatgtatggttcatataagcaccaaatattttaacaccattaggtattcttgtaacaccagcacgcatagcaatgt |
663457 |
T |
|
| Q |
745 |
tgtgaacaatatttgcaccactgctatcaccaccaataaaaactttgttgaaatc |
799 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
663456 |
tgtgaacaatatttgcaccactgctatcaccaccaataaaaactttgttgaaatc |
663402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 664131 - 664055
Alignment:
| Q |
80 |
agacacgcaagacaaaaacgacatagtagaaggacacgtaagacataaacaacatagtaaaaggtgctatatgtgtg |
156 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
664131 |
agacacgcaagataaaaacgacatagtaaaatgacacgtaagacgtagacaacatgataaaaggtgctatatgtgtg |
664055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 723 - 798
Target Start/End: Complemental strand, 673249 - 673174
Alignment:
| Q |
723 |
acaccagcacgcatagcaatgttgtgaacaatatttgcaccactgctatcaccaccaataaaaactttgttgaaat |
798 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||| ||||||| |||||||||||||| |||||| | ||||||| |
|
|
| T |
673249 |
acaccagcacgcatagcaacgttgtgacaaagattaccaccactactatcaccaccaatgaaaactctattgaaat |
673174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 47301960 - 47301902
Alignment:
| Q |
339 |
tcagattcaggatggaccatataataacaatgatcttcatcttcttcttcaaaaaattc |
397 |
Q |
| |
|
|||||||||||||| | |||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
47301960 |
tcagattcaggatgaaagatatgataaacatgatcttcatcttcttcttcaaacaattc |
47301902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 799
Target Start/End: Complemental strand, 47301573 - 47301500
Alignment:
| Q |
726 |
ccagcacgcatagcaatgttgtgaacaatatttgcaccactgctatcaccaccaataaaaactttgttgaaatc |
799 |
Q |
| |
|
|||||||||||||| ||||| ||||| || || ||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
47301573 |
ccagcacgcatagcgatgttatgaactatgttaccaccagcactatcaccaccaatgaaaactctgttgaaatc |
47301500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 362 times since January 2019
Visitors: 2759