View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0358_low_11 (Length: 346)

Name: NF0358_low_11
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0358_low_11
NF0358_low_11
[»] chr6 (2 HSPs)
chr6 (81-284)||(15517851-15518050)
chr6 (205-284)||(19697953-19698033)
[»] chr1 (5 HSPs)
chr1 (166-284)||(12141760-12141874)
chr1 (216-282)||(24981272-24981338)
chr1 (219-284)||(1953632-1953697)
chr1 (211-284)||(47580331-47580404)
chr1 (226-284)||(51465448-51465504)
[»] chr7 (3 HSPs)
chr7 (138-239)||(22301226-22301323)
chr7 (211-284)||(11673937-11674011)
chr7 (217-284)||(5434970-5435037)
[»] chr2 (5 HSPs)
chr2 (205-284)||(2590431-2590510)
chr2 (205-284)||(35969381-35969460)
chr2 (205-284)||(18739219-18739299)
chr2 (233-284)||(14433708-14433759)
chr2 (205-284)||(21189332-21189411)
[»] chr8 (6 HSPs)
chr8 (211-284)||(1789007-1789081)
chr8 (205-284)||(38676239-38676317)
chr8 (205-284)||(38678618-38678696)
chr8 (143-281)||(21346985-21347118)
chr8 (205-259)||(17028285-17028340)
chr8 (205-259)||(17558721-17558776)
[»] chr5 (4 HSPs)
chr5 (166-284)||(26703126-26703240)
chr5 (166-284)||(26972859-26972973)
chr5 (216-284)||(18594756-18594824)
chr5 (205-280)||(39292036-39292111)
[»] scaffold0014 (1 HSPs)
scaffold0014 (211-284)||(82557-82631)
[»] chr4 (2 HSPs)
chr4 (222-284)||(13010640-13010702)
chr4 (205-262)||(20058192-20058249)
[»] chr3 (1 HSPs)
chr3 (166-282)||(19930144-19930256)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 81 - 284
Target Start/End: Original strand, 15517851 - 15518050
Alignment:
Q  81 gttgttggtttgtatatatgttgctttgatcagtacgtaataagaagaaaaaatgtgaaaattgaacctgcacatatcatacatttatatactccctcac 180  Q
    |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  15517851 gttgttggcttgtatatatgttgctttgatcagtatgtaataaaaagaaaaaatgtgaaaattgaacctgcacatagcatacatttatacactccctcac 15517950  T
Q  181 ttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgtt 280  Q
    |||||||||||||||    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  15517951 ttcatatttatctat----acacaaattaatttccctcattcaaaatattgagtttctgggttacatctcctcatatctttaagataaagttgagttgtt 15518046  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 19698033 - 19697953
Alignment:
Q  205 aattaatttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||| |||| ||| |||||||||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||    
T  19698033 aattattttctctcttccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 19697953  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 12141874 - 12141760
Alignment:
Q  166 tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaaga 265  Q
    ||||||||||||||||||||||||||||| ||    |||||||| |||||||||||||||||||||||||| ||||||| |||  ||||||||||| | |    
T  12141874 tatatactccctcacttcatatttatctacat----acaaattattttccctcatccaaaatattgagtttttgggttatatcttctgatatctttgata 12141779  T
Q  266 taaatttgagttgttctgt 284  Q
    |||||||||||||||||||    
T  12141778 taaatttgagttgttctgt 12141760  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 24981338 - 24981272
Alignment:
Q  216 ctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttct 282  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||    
T  24981338 ctcatccaaaatattgagtttctgtgttacatctcctgatatctttgagataaatttgagttgttct 24981272  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 1953632 - 1953697
Alignment:
Q  219 atccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||    
T  1953632 atccaaaatgttgagtttctgggttacatctcctgacatctttgtgataaatttgagttgttctgt 1953697  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 47580331 - 47580404
Alignment:
Q  211 tttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    |||| |||||||||||| |||||||||||||||||||| ||||| ||||||  |||||||||||||| ||||||    
T  47580331 tttctctcatccaaaatgttgagtttctgggttacatctcctgacatctttgtgataaatttgagttcttctgt 47580404  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 51465448 - 51465504
Alignment:
Q  226 atattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||||||||||||||||||||| |||||||||  | ||||||||||||||||||||||    
T  51465448 atattgagtttctgggttacatctcctgatatc--tgagataaatttgagttgttctgt 51465504  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 22301323 - 22301226
Alignment:
Q  138 aaaattgaacctgcacatatcatacatttatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttc 237  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    ||||| |||| |||  ||||||||||||||||||||||    
T  22301323 aaaattgaacctgcacatagcatacatttaaatactccctcacttcatatttatctat----acacatattattttttctcatccaaaatattgagtttc 22301228  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 11673937 - 11674011
Alignment:
Q  211 tttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    |||| |||||||||||||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||    
T  11673937 tttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 11674011  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 5435037 - 5434970
Alignment:
Q  217 tcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    |||||||||||||||||||| |||||||||||  ||||||| ||| |||||||||| |||||||||||    
T  5435037 tcatccaaaatattgagtttatgggttacatcttctgatatttttgagataaattttagttgttctgt 5434970  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 2590431 - 2590510
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||| |||| |||||| |||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||    
T  2590431 aattattttctctcatctaaaatattgagtttctgggttatatctcctgatatctatgagataaatttgagttgttctgt 2590510  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 35969460 - 35969381
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||| |||| |||||| |||||||||||||||| |||||||||  | | ||||||| ||||||||||||||||||||||    
T  35969460 aattattttctctcatctaaaatattgagtttctaggttacatcttcggttatctttgagataaatttgagttgttctgt 35969381  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 18739299 - 18739219
Alignment:
Q  205 aattaatttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||| |||| |||||||||||||||||| ||||||||||||||| | |||||| ||| ||||||||| ||| ||||||||    
T  18739299 aattattttctctcatccaaaatattgaggtttctgggttacatctcatgatatatttgagataaattcgagctgttctgt 18739219  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 14433759 - 14433708
Alignment:
Q  233 gtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||| ||||||    
T  14433759 gtttctaggttacatctcctgatatctttgagataaatttgagttattctgt 14433708  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 21189332 - 21189411
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||| |||| |||||| ||| ||||||| |||||||||||||| || | ||||||| |||| | |||||||||||||||    
T  21189332 aattattttctctcatctaaagtattgagcttctgggttacatctccggttatctttgagattattttgagttgttctgt 21189411  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 1789081 - 1789007
Alignment:
Q  211 tttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    |||| |||||||||||||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||    
T  1789081 tttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 1789007  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 38676239 - 38676317
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||| |||| ||||||||||||||||||||||| ||||  ||| |||| ||||||||| ||||||||||||||||||||    
T  38676239 aattattttctctcatccaaaatattgagtttct-ggttgtatctcctgttatctttaaaataaatttgagttgttctgt 38676317  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 38678618 - 38678696
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||| |||| ||||||||||||||||| ||||||| || |||| | || ||||||||||||||||||||||||||||||    
T  38678618 aattattttctctcatccaaaatattgaatttctgg-ttgcatctcttgttatctttaagataaatttgagttgttctgt 38678696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 281
Target Start/End: Original strand, 21346985 - 21347118
Alignment:
Q  143 tgaacctgcacatatcatacatttatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggt 242  Q
    ||||||||||||||  |||||||  |||| || |||||||||||||| ||| ||| ||     |||| |||| |||||||||| |||||||||| |||||    
T  21346985 tgaacctgcacatagtatacattcgtataatctctcacttcatatttttctgtataca-----attattttctctcatccaaagtattgagtttgtgggt 21347079  T
Q  243 tacatcacctgatatctttaagataaatttgagttgttc 281  Q
    |||||| || | | ||||| |||| | ||| ||||||||    
T  21347080 tacatctccggttgtctttgagattattttcagttgttc 21347118  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 17028285 - 17028340
Alignment:
Q  205 aattaatttccctcatccaaaat-attgagtttctgggttacatcacctgatatct 259  Q
    ||||| |||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  17028285 aattattttctctcatccaaaattattgagtttctaggttacatctcctgatatct 17028340  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 17558721 - 17558776
Alignment:
Q  205 aattaatttccctcatccaaaat-attgagtttctgggttacatcacctgatatct 259  Q
    ||||| |||| |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  17558721 aattattttctctcatccaaaattattgagtttctaggttacatctcctgatatct 17558776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 26703240 - 26703126
Alignment:
Q  166 tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaaga 265  Q
    |||||||||||||||||| |||||||||||| |||    ||||| |||| |||||||||||||||||||||   ||||||||| | |||||||| | |||    
T  26703240 tatatactccctcacttcttatttatctatactca----aattattttctctcatccaaaatattgagtttacaggttacatctcttgatatctgtgaga 26703145  T
Q  266 taaatttgagttgttctgt 284  Q
    |||||||||  ||||||||    
T  26703144 taaatttgaactgttctgt 26703126  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 26972973 - 26972859
Alignment:
Q  166 tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaaga 265  Q
    |||||||||||||||||| |||||||||||| |||    ||||| |||| |||||||||||||||||||||   ||||||||| | |||||||| | |||    
T  26972973 tatatactccctcacttcttatttatctatactca----aattattttctctcatccaaaatattgagtttacaggttacatctcttgatatctgtgaga 26972878  T
Q  266 taaatttgagttgttctgt 284  Q
    |||||||||  ||||||||    
T  26972877 taaatttgaactgttctgt 26972859  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 18594756 - 18594824
Alignment:
Q  216 ctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||    
T  18594756 ctcatctaaaatattgagtttttgggttacatctcctgatatctttgacataaatttgagttgttctgt 18594824  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 39292036 - 39292111
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgtt 280  Q
    ||||| |||| |||||| ||| ||||||| |||||||||||||| || | ||||||| |||| | |||||||||||    
T  39292036 aattattttctctcatctaaagtattgagcttctgggttacatctccggttatctttgagattattttgagttgtt 39292111  T

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Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 82557 - 82631
Alignment:
Q  211 tttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    |||| |||||||||||||||||| |||||||||| |||| | |||||||||| ||||||||||||| ||||||||    
T  82557 tttctctcatccaaaatattgaggtttctgggttgcatctcatgatatctttgagataaatttgagatgttctgt 82631  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 13010702 - 13010640
Alignment:
Q  222 caaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgt 284  Q
    ||||||||||||||| |||||||||||  ||||||||| | ||||| ||||||||||||||||    
T  13010702 caaaatattgagtttttgggttacatcttctgatatctctgagatatatttgagttgttctgt 13010640  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 20058249 - 20058192
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatcttta 262  Q
    ||||| |||| |||||||||| |||||||||||| ||||||||| || | ||||||||    
T  20058249 aattattttctctcatccaaattattgagtttctaggttacatctccggttatcttta 20058192  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 19930256 - 19930144
Alignment:
Q  166 tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttc-tgggttacatcacctgatatctttaag 264  Q
    ||||||||| ||||||||||||||  |||||    ||||| ||| |||| || ||||||||||||||||||  ||||||||||| |||| ||||||| ||    
T  19930256 tatatactctctcacttcatatttccctata----cacaa-ttattttctcttatccaaaatattgagttttgtgggttacatctcctgctatctttgag 19930162  T
Q  265 ataaatttgagttgttct 282  Q
    ||| |||  |||||||||    
T  19930161 atagattcaagttgttct 19930144  T

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