View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_low_12 (Length: 340)
Name: NF0358_low_12
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_12 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 41530446 - 41530741
Alignment:
| Q |
13 |
aaatatagactaattagacgtaataacataaaattatttttaatatnnnnnnncataattatttttaactttcaacttgatatttcctcttacaagcagt |
112 |
Q |
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| T |
41530446 |
aaatatagagtaattagacgtaataacataaaattatttttaatataaaaaa-cataattatttttaactttcaacttgatctttcctcttacaagcagt |
41530544 |
T |
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| Q |
113 |
gacatgtttccaaataacacgtcggttttctaggagagatacattcatcatatgcacaatcatccttagtcacacaagggagaaaacctgtatgtcaaat |
212 |
Q |
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| T |
41530545 |
gacatgtttccaaataacacgtcggttttctaggagagatacattcatcatatgcacaatcatccttagtcacacaagggagaaaacctgtatgtcaaat |
41530644 |
T |
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| Q |
213 |
aagaatagttgaaagttactagaaagaaaaggatggaagattttatatatataataattgaaatgtgtgtgtgaaaaatgacttactatgactggttac |
311 |
Q |
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| T |
41530645 |
aagaatagttgaaagttactagaaagaaagggatggaaaattt--tatatataataattgaaatgtgtgtgtgaaaaatgacttactatgactggttac |
41530741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 9868 - 9752
Alignment:
| Q |
101 |
cttacaagcagtgacatgtttccaaataacacgtcggttttctaggagagatacattcatcatatgcacaatcatccttagtcacacaagggagaaaacc |
200 |
Q |
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||||| |||| || |||| ||||||||||||| || ||| ||||| | |||| |||||| || ||||||| |||||||| |||||| |||||||| |
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| T |
9868 |
cttaccagcaatggcatgcttccaaataacacactggatttttaggaaatttacaatcatcaaatacacaatcgtccttagtttgacaaggaagaaaacc |
9769 |
T |
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| Q |
201 |
tgtatgtcaaataagaa |
217 |
Q |
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| T |
9768 |
tgtatgtcaaataagaa |
9752 |
T |
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