View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_low_13 (Length: 334)
Name: NF0358_low_13
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 1483148 - 1483450
Alignment:
| Q |
18 |
agagaagcaaataagtttcagctgagtgcatatttgcaatcaatttccacaacaggcctcaaacnnnnnnnncctgtttgcttaatcttctactcttttt |
117 |
Q |
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| T |
1483148 |
agagaagcaaataagtttcagctgagtgcatatgtgcaatcaatttccacaacaggcctcaaacttttttttcctgtttgcttaatcttctactcttttt |
1483247 |
T |
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| Q |
118 |
tgaagaagcttaacttccacttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgattttataatttgaagtatttga |
217 |
Q |
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| T |
1483248 |
taaagaagcttaacttccacttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgattttataatttgaagtatttga |
1483347 |
T |
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| Q |
218 |
tcacattattgttttaacagaaaattgt---------caaaaattgtttcttgcttgaatgtatgatcaccttctccaatctagcctcatttgaacatga |
308 |
Q |
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| T |
1483348 |
tcatattattgttttaacagaaaattgtacattgaagcaaaaattgtttcttgcttaaatgtatgatcaccttctccaatctagcctcatttgaacatga |
1483447 |
T |
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| Q |
309 |
tga |
311 |
Q |
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||| |
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| T |
1483448 |
tga |
1483450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36717907 - 36717980
Alignment:
| Q |
1 |
gggtaaacttgatttaaagagaagcaaataagtttcagctgagtgcatatttgcaatcaatttccacaacaggc |
74 |
Q |
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| T |
36717907 |
gggtaaacttgatttaaagagaagcaaaaatgtttcagctgagtacaaatattcaatcaatttccacaacaggc |
36717980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 36717499 - 36717567
Alignment:
| Q |
131 |
cttccacttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
199 |
Q |
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| T |
36717499 |
cttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatgatttt |
36717567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 1482772 - 1482834
Alignment:
| Q |
137 |
cttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
199 |
Q |
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||||||||||| || |||| |||||||| ||||||||||||| || |||||| |||||||||| |
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| T |
1482772 |
cttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgatttt |
1482834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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