View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_low_18 (Length: 280)
Name: NF0358_low_18
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_18 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 14493292 - 14493114
Alignment:
| Q |
71 |
cttgatctctcaaacaaccaactttccggaacaattccttcaagcttgtcctccttgtcatttttagggtccttggatttgtccgataacaacctctcgg |
170 |
Q |
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| T |
14493292 |
cttgatctctcaaacaaccaactttccggaacaattccttcaagcttgtcttccttgtcatttttagggtccttggatttgtccgataacaacctctcgg |
14493193 |
T |
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| Q |
171 |
gtgtcattccatatacaggccatatgacaacctttgatgcaatatattttactgggaatccgggtctctgtgctcctcc |
249 |
Q |
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| T |
14493192 |
gtgtcattccatatacaggccatatgacaacttttgaagctatgactttttcgaggaattcgggtctctgtggtcctcc |
14493114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 14458054 - 14458229
Alignment:
| Q |
67 |
atctcttgatctctcaaacaaccaactttccggaacaattccttcaagcttgtcctccttgtcatttttagggtccttggatttgtccgataacaacctc |
166 |
Q |
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| T |
14458054 |
atctcttgatctctcaaacaaccaactttctggaccaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaataataacctg |
14458153 |
T |
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| Q |
167 |
tcgggtgtcattccatatacaggccatatgacaacctttgatgcaatatattttactgggaatccgggtctctgtg |
242 |
Q |
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| T |
14458154 |
tctggtgtcattccttatacaggccatatgacaacttttgaagctatcactttttctgggaatcctagtctctgtg |
14458229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 249
Target Start/End: Complemental strand, 14468879 - 14468696
Alignment:
| Q |
66 |
aatctcttgatctctcaaacaaccaactttccggaacaattccttcaagcttgtcctccttgtcatttttagggtccttggatttgtccgataacaacct |
165 |
Q |
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| T |
14468879 |
aatctcttgatctctcgagcaaccgactttctggtaagattcctttaagtttgccttccttgtcatttttggggggcctaaacttgtcccacaacaacct |
14468780 |
T |
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| Q |
166 |
ctcgggtgtcattccatatacaggccatatgacaacctttgatgcaatatattttactgggaatccgggtctctgtgctcctcc |
249 |
Q |
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| T |
14468779 |
tcagggtgtcattccttacacaggccaaatgacaacctttgatgcatcagcttttactgggaatccgagtctttgtggtcctcc |
14468696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 10164 - 10245
Alignment:
| Q |
83 |
aacaaccaactttccggaacaattccttcaagcttgtcctccttgtcatttttagggtccttggatttgtccgataacaacc |
164 |
Q |
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| T |
10164 |
aacaaccaactttctggaacaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaataataacc |
10245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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