View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_low_19 (Length: 274)
Name: NF0358_low_19
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2830306 - 2830063
Alignment:
| Q |
1 |
ttgatcgacattattcaacactctaaagtaagttgttaactttagaggagtctgattcaacatgaatttaggcaacattctttattctaagctcatcaaa |
100 |
Q |
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| T |
2830306 |
ttgatcgacattattcaacactctaaagtaagttgttaactttagaggagtctgattcaacatgaatttaggcaacattctttattctaagctcatcaaa |
2830207 |
T |
|
| Q |
101 |
acaacacacatattttagataatttcttatgcattagaagaaagaaaggtgaagagcataaagaacaaatattgatattttacctggacaatcagttcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2830206 |
acaacacacatattttagataatttcttatgcattagaagaaagaaaggtaaagagcataaagaacaaatattgatattttacctggacaatcagttcgt |
2830107 |
T |
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| Q |
201 |
ggactgcttaaagttagaagtccctcaaatgttccagcctatgc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2830106 |
ggactgcttaaagttagaagtccctcaaatgttccagcccatgc |
2830063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2789052 - 2788809
Alignment:
| Q |
1 |
ttgatcgacattattcaacactctaaagtaagttgttaactttagaggagtctgattcaacatgaatttaggcaacattctttattctaagctcatcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||| |||||||||||||| |
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| T |
2789052 |
ttgatcgacattattcaacactctaaagtaagttgtttactttagaggagtctgatccaacattaatttagggaacattctttatcctaagctcatcaaa |
2788953 |
T |
|
| Q |
101 |
acaacacacatattttagataatttcttatgcattagaagaaagaaaggtgaagagcataaagaacaaatattgatattttacctggacaatcagttcgt |
200 |
Q |
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||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788952 |
acaacacacatatttaatataacttcttatgcattagaagaaagaaaggtgaagagcataaagaacaaatattgatattttacctggacaatcagttcgt |
2788853 |
T |
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| Q |
201 |
ggactgcttaaagttagaagtccctcaaatgttccagcctatgc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2788852 |
ggactgcttaaagttagaagtccctcaaatgttccagcccatgc |
2788809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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