View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_low_2 (Length: 600)
Name: NF0358_low_2
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_2 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 36 - 593
Target Start/End: Original strand, 30892445 - 30893001
Alignment:
| Q |
36 |
acggacactcctcggattaa-cgtctcccatccgacaccgacatgacaaattattagcagcgtcggtgtgtcggtgtccgtatccgtacttcatagctat |
134 |
Q |
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| T |
30892445 |
acggacactcctcggattaaacgtctcccatccgacaccgacatgacaaattattagcggcgtcggtgtgtcagtgtctgtatccgtacttcatagctat |
30892544 |
T |
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| Q |
135 |
atagttgcgtaacacaagaattatcatcacagcaaacagcagaaaaagaatgagaagcagcttcaattgtgtctgattgattcacttcaa----gagaaa |
230 |
Q |
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| T |
30892545 |
atagttgcgtaacacaagaattatcatcacagcaaacagcagaaaaagaatgagaagcagcttcaattatgtctgattgattcacttcaattgtgagaaa |
30892644 |
T |
|
| Q |
231 |
aaa-ttgttatggtgaaagagttgaaaaattacattgatgttggaatacatataggcaagtttatagtttagtcatttgaagaggaaaaaagaagtgtga |
329 |
Q |
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| T |
30892645 |
aaaattgttatggtgaaagagttgaaaaattacattgat---------catataggcaagtttatattttagtcctttgaagaggaaaaaagaagtgtga |
30892735 |
T |
|
| Q |
330 |
tataaaatgtagttggacaatatgtaattatacacactttaaggctattcgttccttggagatgaattttacccacacttaatgtatgtttggattaaaa |
429 |
Q |
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| T |
30892736 |
tataaaatgtagttggacacaatgtaattagacacactttaaggctattcgttccttggagatgaatttttcccacacttaatgtatgtttggattaaaa |
30892835 |
T |
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| Q |
430 |
attgtaaatgtgctttttaatcaaa-gttatttttcaattgtaaatatacattttttacaaatgttttacgtttggatattttcatcgtaaacgtataat |
528 |
Q |
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| T |
30892836 |
attgtaaatgtgctttttaattaaatgttatttttcaattgtaaatatacattttttacaagtgttttatgtttggatactttcattgtaaacgtataat |
30892935 |
T |
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| Q |
529 |
a-nnnnnnncttgagagaagaacgtataattgacaatatacatttatgtttctttgcttcatctca |
593 |
Q |
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| T |
30892936 |
atttttttccttgagggaagaatgtataattgacaatatacatttatgtttctttgcttcatctca |
30893001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 27084279 - 27084230
Alignment:
| Q |
81 |
caaattattagcagcgtcggtgtgtcggtgtccgtatccgtacttcatag |
130 |
Q |
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| T |
27084279 |
caaattattagcagtgtcggagtgtccgtgtccgtatccgtgcttcatag |
27084230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 1705034 - 1705083
Alignment:
| Q |
81 |
caaattattagcagcgtcggtgtgtcggtgtccgtatccgtacttcatag |
130 |
Q |
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| T |
1705034 |
caaattattagatgtgtcggtgtgtcggtgtccgtatccgtgcttcatag |
1705083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 42893377 - 42893326
Alignment:
| Q |
81 |
caaattattagcagcgtcggtgtgtcggtgtccgtatccgtacttcatagct |
132 |
Q |
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| T |
42893377 |
caaattattagctgtgtcggtgtgtccgtgtccatatccgtgcttcatagct |
42893326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 92824 - 92775
Alignment:
| Q |
81 |
caaattattagcagcgtcggtgtgtcggtgtccgtatccgtacttcatag |
130 |
Q |
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| T |
92824 |
caaattattagcggtgtcggcgtgtcagtgtccgtatccgtgcttcatag |
92775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 19147445 - 19147494
Alignment:
| Q |
81 |
caaattattagcagcgtcggtgtgtcggtgtccgtatccgtacttcatag |
130 |
Q |
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| T |
19147445 |
caaattattagctgtgtccgtgtgtcagtgtccgtatccgtgcttcatag |
19147494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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