View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0358_low_21 (Length: 251)
Name: NF0358_low_21
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31012669 - 31012891
Alignment:
| Q |
1 |
ttttgagtaaaagtaaaatgaaataagaaacaagaaaatgtaataggttgagaagttgaagaattgttaaaccaaccaagatcatcataatagtaagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31012669 |
ttttgagtaaaagtaaaatgaaataagaaacaagaaaatgtaataggttgagaagatgaagaattgttaaaccaaccaagatcatcataatagtaagaat |
31012768 |
T |
|
| Q |
101 |
gccatcgatacgaatcaactatggtttcaatttaaaaactaaagaggaatcattctaatgttttctccaacgggaagaaacgcacgttaaatctaaaact |
200 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| | | | ||||||||||||| || ||||||||| |
|
|
| T |
31012769 |
gccatcgatacgaatcaactagggttttaatttaaaaactaaagaggaatcattctaaagttttcttcgatgaaaagaaacgcacgtcaagtctaaaact |
31012868 |
T |
|
| Q |
201 |
ccaatgtttatattcacaaaaat |
223 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
31012869 |
ccaatgtttagcttcacaaaaat |
31012891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 11332170 - 11332218
Alignment:
| Q |
175 |
aagaaacgcacgttaaatctaaaactccaatgtttatattcacaaaaat |
223 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
11332170 |
aagaaacgcacgttaagtctaaaacttcaatgtttaacttcacaaaaat |
11332218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 28761615 - 28761665
Alignment:
| Q |
173 |
ggaagaaacgcacgttaaatctaaaactccaatgtttatattcacaaaaat |
223 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
28761615 |
ggaataaacgcacgttaagtctaaagctccaatgtttagcttcacaaaaat |
28761665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 661 times since January 2019
Visitors: 2783