View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_low_24 (Length: 201)
Name: NF0358_low_24
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 38252752 - 38252873
Alignment:
| Q |
1 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38252752 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
38252851 |
T |
|
| Q |
101 |
tcgtaccctgaacccctatgct |
122 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
38252852 |
tcgtaccctgaacccctttgct |
38252873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 43156790 - 43156669
Alignment:
| Q |
1 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43156790 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
43156691 |
T |
|
| Q |
101 |
tcgtaccctgaacccctatgct |
122 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
43156690 |
tcgtaccctgaacccctttgct |
43156669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11474114 - 11473993
Alignment:
| Q |
1 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11474114 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
11474015 |
T |
|
| Q |
101 |
tcgtaccctgaacccctatgct |
122 |
Q |
| |
|
||||||||||||||||| |||| |
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| T |
11474014 |
tcgtaccctgaacccctttgct |
11473993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 50019505 - 50019626
Alignment:
| Q |
1 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50019505 |
cctgtgaacttttttctttacgtggagcgcaactagatgtagcgcgactttgctggttttccagaaaacttttgtgtcgcttaattcgctttgaaccggg |
50019604 |
T |
|
| Q |
101 |
tcgtaccctgaacccctatgct |
122 |
Q |
| |
|
||||||||||||||||| |||| |
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| T |
50019605 |
tcgtaccctgaacccctttgct |
50019626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 28245962 - 28246043
Alignment:
| Q |
41 |
agcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaacccctatgct |
122 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
28245962 |
agcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggttgtaccctgaacccctttgct |
28246043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19307614 - 19307735
Alignment:
| Q |
1 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19307614 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccaaacaacttttgtgtcgcttaattcgctttgaaccggg |
19307713 |
T |
|
| Q |
101 |
tcgtaccctgaacccctatgct |
122 |
Q |
| |
|
||||||||||||||||| |||| |
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| T |
19307714 |
tcgtaccctgaacccctttgct |
19307735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 25382227 - 25382106
Alignment:
| Q |
1 |
cctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25382227 |
cctgtgaacttttttctttaggtggagcgcggctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccggg |
25382128 |
T |
|
| Q |
101 |
tcgtaccctgaacccctatgct |
122 |
Q |
| |
|
||||||| ||||||||| |||| |
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|
| T |
25382127 |
tcgtaccttgaacccctttgct |
25382106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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