View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_low_4 (Length: 457)
Name: NF0358_low_4
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 73 - 429
Target Start/End: Original strand, 7755364 - 7755718
Alignment:
| Q |
73 |
aggagcgcgaggagaaaatgattcaactaaaaaagagagaatctgagagagatgatagtttacaagtcattttccttataattagttaaatgtttgggga |
172 |
Q |
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| T |
7755364 |
aggagcgcgaggagaaaatgattcaactaaaaaagagagaatctgagagagttgatagtttacaagtcattttccttataattagttaaatgtttgggga |
7755463 |
T |
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| Q |
173 |
cttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctctt |
272 |
Q |
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| T |
7755464 |
cttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctctt |
7755563 |
T |
|
| Q |
273 |
ttcatgtttcctaatagcatcttcataactatttttctgatacctaacatcgctaggttccatcttataaaatataacgaaaaccgattttccattattt |
372 |
Q |
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| T |
7755564 |
ttcatgtttcctaatagcatcttcataactatttttctgatacctaacatcgctaggttccatc-tat-aaatataacgaaaaccgattttccattattt |
7755661 |
T |
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| Q |
373 |
tcataacagtcaacgatcttaacaagttcatcaaggcaccaagttgaagaagcatat |
429 |
Q |
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| T |
7755662 |
tcataacagtcaacgatcttaacaagttcatcaaggcaccaagttgaagaagcatat |
7755718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 150 - 428
Target Start/End: Original strand, 7762894 - 7763173
Alignment:
| Q |
150 |
ataattagttaaatgtttggggacttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttc |
249 |
Q |
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| T |
7762894 |
ataattaattaatggtttgagaacttacatattatctttgcaatgtaatccactgagagcacaaacacgattcaaagccaacctccatgctttcaccttc |
7762993 |
T |
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| Q |
250 |
tccgattcccttccaaatctcttttcatgtttcctaatagcatcttcataactatttttctga-tacctaacatcgctaggttccatcttataaaatata |
348 |
Q |
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| T |
7762994 |
tccgattcctttccaaatctattttcatgtttcatcattgcaatttcataactattcctctgactacctaacatctgaaggttctatcttataaaaaata |
7763093 |
T |
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| Q |
349 |
acgaaaaccgattttccattattttcataacagtcaacgatcttaacaagttcatcaaggcaccaagttgaagaagcata |
428 |
Q |
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|| || || ||||||| ||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |
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| T |
7763094 |
acaaatactgattttctatttttgtcataacagtcaacgatcttgactagttcatcaaggcaccaagtggaagaagcata |
7763173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 172 - 425
Target Start/End: Original strand, 7839585 - 7839841
Alignment:
| Q |
172 |
acttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctct |
271 |
Q |
| |
|
||||||| |||||||||| | | || |||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||| |||||||||||| |
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| T |
7839585 |
acttacatatcgtccttgtagtatagtccactaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctct |
7839684 |
T |
|
| Q |
272 |
tttcatgtttcctaatagcatcttcataactatttttctgatacctaacatcgctaggttccatcttataaaatataacgaaaaccgattttccattatt |
371 |
Q |
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| T |
7839685 |
tttcatgttgaatcattgcaatttcatagctctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcat |
7839784 |
T |
|
| Q |
372 |
ttc---ataacagtcaacgatcttaacaagttcatcaaggcaccaagttgaagaagc |
425 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
7839785 |
ctcgtagtaacagtcaacgatcttaacaagttcgtcaaggcaccaagtggaagaagc |
7839841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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