View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0358_low_5 (Length: 435)
Name: NF0358_low_5
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0358_low_5 |
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| [»] scaffold0416 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 1345918 - 1346143
Alignment:
| Q |
6 |
tgagatgaagtgcc-agtcttccttggaattcaataagtctcaacagagttctagatttgttgattcattaagagtagagagagatataatgcctaatcc |
104 |
Q |
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||||| |||||||| | |||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1345918 |
tgagaagaagtgcccaatcttccttagaattgaataagtctcaacagagttttaaatttgttgattcattaagagtagagagagatctaatgcctaatcc |
1346017 |
T |
|
| Q |
105 |
accttcaaagagaggctttcaagattttttcaagaaatagtcactaattttctttttgaaacatcaccactccaaatgaaatttctcat-caaatttcaa |
203 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
1346018 |
accttcaaagagaggcttgcaagatttttccaagaaatagtcactaattttctttttgaaacatcaccactccaaatgaaatttcttgtccaaatttcaa |
1346117 |
T |
|
| Q |
204 |
tgaacatgtttaactgaaatttattg |
229 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
1346118 |
tgaacatgtttaactgaattttattg |
1346143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 270 - 407
Target Start/End: Original strand, 1346184 - 1346322
Alignment:
| Q |
270 |
gaacttgtttacttgaaaatgca-agctaggttatagaaaggaaaacgatgtacatgaagggaaaaaagaaggttacctcctgaagaactgttaaagatc |
368 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| || |||||||||||||| |
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| T |
1346184 |
gaacttgtttacttgaaaatgcatagctaggttatagaaaggaaaatgatgtagataaagggaaaaaagaaggttacctcctcaaaaactgttaaagatc |
1346283 |
T |
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| Q |
369 |
aaaccagttttgaagttgaagaacttgagctctaataat |
407 |
Q |
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| T |
1346284 |
aaaccggttttgaagttgaagaacttgagctctaataat |
1346322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 7577161 - 7577042
Alignment:
| Q |
58 |
agatttgttgattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagatttttt--caagaaatagtcactaatttt |
155 |
Q |
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| T |
7577161 |
agattagttgattcattaagaatggagagagacctgatgcctaagccaccttctgagagaggcttgcaagatttttttccaagaaacagtccctaatttt |
7577062 |
T |
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| Q |
156 |
ctttttgaaacatcaccact |
175 |
Q |
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||||| || ||||||||||| |
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| T |
7577061 |
cttttagagacatcaccact |
7577042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 14721958 - 14721785
Alignment:
| Q |
18 |
ccagtcttccttggaattcaataagtctcaacagagttctagatttgttgattcattaagagtagagagagatataatgcctaatccaccttcaaagaga |
117 |
Q |
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||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |
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| T |
14721958 |
ccagtcttccttggaattcaataagtcccaacaaagttttagatttgttgattcattaagagtagagacagatctaatgcctaatccaccttcagagaga |
14721859 |
T |
|
| Q |
118 |
ggctttcaagatttttt-caagaaatagtcactaattttctttttgaaacatcaccactccaaatgaaatttct |
190 |
Q |
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||||| ||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14721858 |
ggcttgcaagattttttccatgaaacagtcactaattttctttttaaaacatcaccactccaaatgaaatttct |
14721785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 12220055 - 12220185
Alignment:
| Q |
58 |
agatttgttgattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagattttttc-aagaaatagtcactaattttc |
156 |
Q |
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||||| ||||||||||||||| | |||||||| | |||||||| |||||||| |||||||||| |||||||||||| |||||| |||||||||||||| |
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| T |
12220055 |
agattagttgattcattaagaatggagagagacctgatgcctaagccaccttctgagagaggcttgcaagattttttccaagaaacagtcactaattttc |
12220154 |
T |
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| Q |
157 |
tttttgaaacatcaccactccaaatgaaatt |
187 |
Q |
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|||| || |||||||||||||| |||||||| |
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| T |
12220155 |
ttttagagacatcaccactccatatgaaatt |
12220185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 28185925 - 28186053
Alignment:
| Q |
60 |
atttgttgattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagatttttt-caagaaatagtcactaattttctt |
158 |
Q |
| |
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||||||||||||||| ||| |||||||||| | |||||||| ||||||||| |||||||||| ||||||||||| ||||||| ||||| || ||||||| |
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| T |
28185925 |
atttgttgattcatttagaatagagagagacctgatgcctaagccaccttcagagagaggcttgcaagattttttccaagaaacagtcaatagttttctt |
28186024 |
T |
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| Q |
159 |
tttgaaacatcaccactccaaatgaaatt |
187 |
Q |
| |
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|| || |||||||||||||| |||||||| |
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| T |
28186025 |
ttagagacatcaccactccatatgaaatt |
28186053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 10011384 - 10011274
Alignment:
| Q |
81 |
agagagagatataatgcctaatccaccttcaaagagaggctttcaagattttttc-aagaaatagtcactaattttctttttgaaacatcaccactccaa |
179 |
Q |
| |
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|||||||||| |||| ||||| || |||||| | | ||||||||| | ||||||| |||||| ||||| ||||||||||| |||| ||||||||||||| |
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| T |
10011384 |
agagagagatctaatccctaaacccccttcagataaaggctttcaggtttttttccaagaaactgtcaccaattttcttttggaaatatcaccactccaa |
10011285 |
T |
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| Q |
180 |
atgaaatttct |
190 |
Q |
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||||||||||| |
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| T |
10011284 |
atgaaatttct |
10011274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 24187053 - 24187177
Alignment:
| Q |
67 |
gattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagattttttc-aagaaatagtcactaattttctttttgaaa |
165 |
Q |
| |
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|||||||| ||| |||||||||| |||| ||||| || |||||| | | |||||| || | ||| ||| |||||| ||||| ||||||||||| |||| |
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| T |
24187053 |
gattcattgagaagagagagagatctaatccctaaacccccttcagataaaggcttacaggttttattccaagaaactgtcaccaattttcttttggaaa |
24187152 |
T |
|
| Q |
166 |
catcaccactccaaatgaaatttct |
190 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
24187153 |
tatcaccactccaaatgaaatttct |
24187177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 19282139 - 19282263
Alignment:
| Q |
67 |
gattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagattttttc-aagaaatagtcactaattttctttttgaaa |
165 |
Q |
| |
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|||||||| ||| || ||||||| |||| ||||| || ||||| | | |||||| |||| ||||||| |||||| |||||| ||||||||||| | || |
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| T |
19282139 |
gattcattgagaataatgagagatttaatccctaaacccccttcggataaaggcttgcaagtttttttccaagaaacagtcaccaattttcttttggcaa |
19282238 |
T |
|
| Q |
166 |
catcaccactccaaatgaaatttct |
190 |
Q |
| |
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|||||||||||| ||||||||||| |
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| T |
19282239 |
tatcaccactccatatgaaatttct |
19282263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 339 - 403
Alignment:
| Q |
97 |
cctaatccaccttcaaagagaggctttcaagatttt-ttcaagaaatagtcactaattttctttt |
160 |
Q |
| |
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||||||||||||||| ||||||| || ||||||||| | || |||| ||| |||||||||||||| |
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|
| T |
339 |
cctaatccaccttcagagagaggtttccaagattttctccaggaaacagttactaattttctttt |
403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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