View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0358_low_9 (Length: 358)

Name: NF0358_low_9
Description: NF0358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0358_low_9
NF0358_low_9
[»] chr3 (7 HSPs)
chr3 (80-203)||(18344711-18344834)
chr3 (90-193)||(4334879-4334983)
chr3 (90-203)||(49821161-49821274)
chr3 (217-278)||(4334795-4334857)
chr3 (88-135)||(4335094-4335141)
chr3 (217-278)||(21631998-21632060)
chr3 (80-116)||(3593732-3593768)
[»] chr5 (5 HSPs)
chr5 (90-193)||(20404319-20404423)
chr5 (93-278)||(34992914-34993101)
chr5 (217-278)||(20404446-20404508)
chr5 (88-135)||(20404161-20404208)
chr5 (88-135)||(34993188-34993235)
[»] chr1 (11 HSPs)
chr1 (90-193)||(41771871-41771975)
chr1 (90-193)||(46389844-46389948)
chr1 (90-193)||(7730294-7730398)
chr1 (90-193)||(37393065-37393169)
chr1 (106-278)||(7730310-7730486)
chr1 (217-278)||(41771788-41771850)
chr1 (217-278)||(46389970-46390032)
chr1 (88-135)||(7730136-7730183)
chr1 (88-135)||(41772086-41772133)
chr1 (88-135)||(46389687-46389734)
chr1 (217-278)||(37392981-37393043)
[»] chr7 (4 HSPs)
chr7 (90-193)||(46368897-46369001)
chr7 (217-278)||(46369025-46369087)
chr7 (88-135)||(46368739-46368786)
chr7 (137-174)||(32618102-32618139)
[»] chr4 (1 HSPs)
chr4 (90-180)||(37083368-37083458)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 18344711 - 18344834
Alignment:
Q  80 caaaaaattgtagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaa 179  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||||  | || | |||||||||||||||||||||||||||||||||| ||||||||    
T  18344711 caaaaaattttagttgaagataaatacaaataatgaagattagaaaaaggagga-gaggtacatgttagataatgaaaagagtaaattttaaacatcaaa 18344809  T
Q  180 tg-ccttgtggatctgataagttca 203  Q
    || || ||| |||||||||||||||    
T  18344810 tgcccatgtagatctgataagttca 18344834  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 4334983 - 4334879
Alignment:
Q  90 tagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaat-gccttgtg 188  Q
    ||||||||||| ||  |||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||  |||||||    
T  4334983 tagttgaagattaagacaaataatgaagataagaaaaacaaaaaagaggtacatattagataatgaagagagtaaattttagacatcaaatacccttgtg 4334884  T
Q  189 gatct 193  Q
    |||||    
T  4334883 gatct 4334879  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 49821274 - 49821161
Alignment:
Q  90 tagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaatg--ccttgt 187  Q
    ||||||| ||||||| ||||||||||| || |||||||  | ||    |||||||||||||||||||| |||||||||||||||||||||||  || |||    
T  49821274 tagttgatgataaatacaaataatgaatattagaaaaaggaggaga--gtacatgttagataatgaaatgagtaaattttagacatcaaatgccccatgt 49821177  T
Q  188 ggatctgataagttca 203  Q
     |||||||||||||||    
T  49821176 agatctgataagttca 49821161  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 4334857 - 4334795
Alignment:
Q  217 caggacttt-aactacttgtttagttgaagaatgaacaattttcaagttttctgcaaaataaa 278  Q
    ||||||||| ||||||||||||||||| | ||||||||  |||||||||| ||||||||||||    
T  4334857 caggactttcaactacttgtttagttgtaaaatgaacagctttcaagtttcctgcaaaataaa 4334795  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 4335141 - 4335094
Alignment:
Q  88 tgtagttgaagataaattcaaataatgaagataagaaaaacaaagaag 135  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||||||    
T  4335141 tgtagttaaagataaatacaaataatgaagatcagaagaacaaagaag 4335094  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 21632060 - 21631998
Alignment:
Q  217 caggacttt-aactacttgtttagttgaagaatgaacaattttcaagttttctgcaaaataaa 278  Q
    ||||||||| ||||||||||| ||||| | ||||||||| |||||| ||| ||||||||||||    
T  21632060 caggactttcaactacttgttcagttgtaaaatgaacaactttcaattttcctgcaaaataaa 21631998  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 3593768 - 3593732
Alignment:
Q  80 caaaaaattgtagttgaagataaattcaaataatgaa 116  Q
    |||||||||||||||||| |||||| |||||||||||    
T  3593768 caaaaaattgtagttgaatataaatacaaataatgaa 3593732  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 20404319 - 20404423
Alignment:
Q  90 tagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaat-gccttgtg 188  Q
    ||||||||||| ||  |||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||  |||||||    
T  20404319 tagttgaagattaagacaaataatgaagataagaaaaacaaaaaagaggtacatattagataatgaagagagtaaattttagacatcaaatacccttgtg 20404418  T
Q  189 gatct 193  Q
    |||||    
T  20404419 gatct 20404423  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 278
Target Start/End: Complemental strand, 34993101 - 34992914
Alignment:
Q  93 ttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaat-gccttgtgga- 190  Q
    |||||||| ||  |||||||||||||||||||||||||| ||| ||||||| ||| |||||||| |||||||||||||||||||||||  |||||||||     
T  34993101 ttgaagattaagacaaataatgaagataagaaaaacaaaaaagaggtacatattaaataatgaagagagtaaattttagacatcaaatacccttgtggat 34993002  T
Q  191 -tctgataagttcannnnnnnnnnnnacaggacttt-aactacttgtttagttgaagaatgaacaattttcaagttttctgcaaaataaa 278  Q
     |||||||| ||               ||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  34993001 ctctgataattt--ttttttttttttgcaggactttcaactacttgtttagttgtaaaatgaacaactttcaagttttctgcaaaataaa 34992914  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 20404446 - 20404508
Alignment:
Q  217 caggacttt-aactacttgtttagttgaagaatgaacaattttcaagttttctgcaaaataaa 278  Q
    ||||||||| ||||||||||||||||| | ||||||||  |||||||||| ||||||||||||    
T  20404446 caggactttcaactacttgtttagttgtaaaatgaacagctttcaagtttcctgcaaaataaa 20404508  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 20404161 - 20404208
Alignment:
Q  88 tgtagttgaagataaattcaaataatgaagataagaaaaacaaagaag 135  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||||||    
T  20404161 tgtagttaaagataaatacaaataatgaagatcagaagaacaaagaag 20404208  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 34993235 - 34993188
Alignment:
Q  88 tgtagttgaagataaattcaaataatgaagataagaaaaacaaagaag 135  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||||||    
T  34993235 tgtagttaaagataaatacaaataatgaagatcagaagaacaaagaag 34993188  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 41771975 - 41771871
Alignment:
Q  90 tagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaat-gccttgtg 188  Q
    ||||||||||| ||  |||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||  |||||||    
T  41771975 tagttgaagattaagacaaataatgaagataagaaaaacaaaaaagaggtacatattagataatgaagagagtaaattttagacatcaaatacccttgtg 41771876  T
Q  189 gatct 193  Q
    |||||    
T  41771875 gatct 41771871  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 46389844 - 46389948
Alignment:
Q  90 tagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaatgcc-ttgtg 188  Q
    ||||||||||| ||  |||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||| |||||||||||||||||| || |||||    
T  46389844 tagttgaagattaagacaaataatgaagataagaaaaacaaaaaagaggtacatattagataatgaagagagaaaattttagacatcaaatacctttgtg 46389943  T
Q  189 gatct 193  Q
    |||||    
T  46389944 gatct 46389948  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 7730294 - 7730398
Alignment:
Q  90 tagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaatgcc-ttgtg 188  Q
    ||||||||||| |   |||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||||| || |||||    
T  7730294 tagttgaagattatgacaaataatgaagataagaaaaacaaaaaagaggtacatattagataatgaagagagtaaattttatacatcaaatacctttgtg 7730393  T
Q  189 gatct 193  Q
    |||||    
T  7730394 gatct 7730398  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 37393169 - 37393065
Alignment:
Q  90 tagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaat-gccttgtg 188  Q
    ||||||||||| ||  |||||||||||||||||| ||||||| ||| ||||||| |||||||| ||| |||||||||||||||||||||||  |||||||    
T  37393169 tagttgaagattaagacaaataatgaagataagataaacaaaaaagaggtacatattagataacgaagagagtaaattttagacatcaaatacccttgtg 37393070  T
Q  189 gatct 193  Q
    |||||    
T  37393069 gatct 37393065  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 278
Target Start/End: Original strand, 7730310 - 7730486
Alignment:
Q  106 caaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaatgcctt-gtggatct--gataagttc 202  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||||| |||| ||||||||  ||||| ||     
T  7730310 caaataatgaagataagaaaaacaaaaaagaggtacatattagataatgaagagagtaaattttatacatcaaatacctttgtggatctttgataatttt 7730409  T
Q  203 annnnnnnnnnnnacaggacttt-aactacttgtttagttgaagaatgaacaattttcaagttttctgcaaaataaa 278  Q
                   |||||||| ||||||||||||||||| | ||||||||  |||||||||| ||||||||||||    
T  7730410 tttatttttttttgtaggactttcaactacttgtttagttgtaaaatgaacagctttcaagtttcctgcaaaataaa 7730486  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 41771850 - 41771788
Alignment:
Q  217 caggacttt-aactacttgtttagttgaagaatgaacaattttcaagttttctgcaaaataaa 278  Q
    ||||||||| ||||||||||||||||| | ||||||||  |||||||||| ||||||||||||    
T  41771850 caggactttcaactacttgtttagttgtaaaatgaacagctttcaagtttcctgcaaaataaa 41771788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 46389970 - 46390032
Alignment:
Q  217 caggacttt-aactacttgtttagttgaagaatgaacaattttcaagttttctgcaaaataaa 278  Q
    ||||||||| ||||||||||||||||| | ||||||||  |||||||||| ||||||||||||    
T  46389970 caggactttcaactacttgtttagttgtaaaatgaacagctttcaagtttcctgcaaaataaa 46390032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 7730136 - 7730183
Alignment:
Q  88 tgtagttgaagataaattcaaataatgaagataagaaaaacaaagaag 135  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||||||    
T  7730136 tgtagttaaagataaatacaaataatgaagatcagaagaacaaagaag 7730183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 41772133 - 41772086
Alignment:
Q  88 tgtagttgaagataaattcaaataatgaagataagaaaaacaaagaag 135  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||||||    
T  41772133 tgtagttaaagataaatacaaataatgaagatcagaagaacaaagaag 41772086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 46389687 - 46389734
Alignment:
Q  88 tgtagttgaagataaattcaaataatgaagataagaaaaacaaagaag 135  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||||||    
T  46389687 tgtagttaaagataaatacaaataatgaagatcagaagaacaaagaag 46389734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 37393043 - 37392981
Alignment:
Q  217 caggacttt-aactacttgtttagttgaagaatgaacaattttcaagttttctgcaaaataaa 278  Q
    ||||||||| ||||||||||||||||| | ||||||||  |||| ||||| ||||||||||||    
T  37393043 caggactttcaactacttgtttagttgtaaaatgaacagctttcgagtttcctgcaaaataaa 37392981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 46368897 - 46369001
Alignment:
Q  90 tagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaat-gccttgtg 188  Q
    ||||||||||| ||  |||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||| |||||||||  |||||||    
T  46368897 tagttgaagatcaagacaaataatgaagataagaaaaacaaaaaagaggtacatattagataatgaagagagtaaattttatacatcaaatacccttgtg 46368996  T
Q  189 gatct 193  Q
    |||||    
T  46368997 gatct 46369001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 46369025 - 46369087
Alignment:
Q  217 caggacttt-aactacttgtttagttgaagaatgaacaattttcaagttttctgcaaaataaa 278  Q
    ||||||||| ||||||||||||||||| | ||||||||  |||||||||| ||||||||||||    
T  46369025 caggactttcaactacttgtttagttgtaaaatgaacagctttcaagtttcctgcaaaataaa 46369087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 46368739 - 46368786
Alignment:
Q  88 tgtagttgaagataaattcaaataatgaagataagaaaaacaaagaag 135  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||||||    
T  46368739 tgtagttaaagataaatacaaataatgaagatcagaagaacaaagaag 46368786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 32618102 - 32618139
Alignment:
Q  137 ggtacatgttagataatgaaaagagtaaattttagaca 174  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  32618102 ggtacatgtcagataaagaaaagagtaaattttagaca 32618139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 37083458 - 37083368
Alignment:
Q  90 tagttgaagataaattcaaataatgaagataagaaaaacaaagaagtggtacatgttagataatgaaaagagtaaattttagacatcaaat 180  Q
    ||||||||||| ||  |||||||||||||||||||||||||| ||| ||||||| ||||| |||||| |||||||||||||||||||||||    
T  37083458 tagttgaagattaagacaaataatgaagataagaaaaacaaaaaagaggtacatattagacaatgaagagagtaaattttagacatcaaat 37083368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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