View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359-Insertion-10 (Length: 142)
Name: NF0359-Insertion-10
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359-Insertion-10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 35689693 - 35689827
Alignment:
| Q |
8 |
caagcttctatgaaactgctatgaagttaactcttcaaatatagaaacatgggtggagggttagttggagacaacataggattaaacgaagaggttatnn |
107 |
Q |
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| T |
35689693 |
caagcttctatgaaactgcaatgaagttaagtcttcaaatatagaaacatgggtggagggttagttggagacaacataggattaaacgaagaggttataa |
35689792 |
T |
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| Q |
108 |
nnnnnncatgtagtttgtcttttaaagctcacaac |
142 |
Q |
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| T |
35689793 |
aaaaagcatgtagtttgtcttttaaagctcacaac |
35689827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 35683286 - 35683187
Alignment:
| Q |
43 |
caaatatagaaacatgggtggagggttagttggagacaacataggattaaacgaagaggttatnnnnnnnncatgtagtttgtcttttaaagctcacaac |
142 |
Q |
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|||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
35683286 |
caaagatagaaacatgggaggaggattagttggagacaacataggattaaacgaagaggttataaaaaaaacatgtagtttgtctttcaaagctcacaac |
35683187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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