View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359-Insertion-11 (Length: 120)
Name: NF0359-Insertion-11
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359-Insertion-11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 5003061 - 5003173
Alignment:
| Q |
8 |
taacatgcctagtatacgacatatatcgttgtctaacattcgtagtatacaacatctgacgaataactaagacaagtgtctcaagaatcccttatttctt |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5003061 |
taacatgcttagtatacgacatatatcgttgtctaacattcgtactatacaacatctgacgaataactaagacaagtgtctcaagaatcccatatttctt |
5003160 |
T |
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| Q |
108 |
ctttacttcggca |
120 |
Q |
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||||||||||||| |
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| T |
5003161 |
ctttacttcggca |
5003173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 5003317 - 5003420
Alignment:
| Q |
8 |
taacatgcctagtatacgacatatatcgttgtctaacattcgtagtatacaacatctgacgaataactaagacaagtgtctcaagaatcccttatttctt |
107 |
Q |
| |
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||||||||||||||||| |||| ||| |||||||| ||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
5003317 |
taacatgcctagtataccacatctattgttgtctagcattcatggtatacaacatctgacgaataactctaacaagtatctcaagaatcccttatttctt |
5003416 |
T |
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| Q |
108 |
cttt |
111 |
Q |
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|||| |
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| T |
5003417 |
cttt |
5003420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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