View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0359-Insertion-2 (Length: 605)

Name: NF0359-Insertion-2
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0359-Insertion-2
NF0359-Insertion-2
[»] chr3 (14 HSPs)
chr3 (341-586)||(33691517-33691762)
chr3 (8-347)||(33691932-33692257)
chr3 (175-319)||(54393487-54393635)
chr3 (240-321)||(9505163-9505244)
chr3 (241-322)||(52199447-52199528)
chr3 (175-319)||(33438775-33438923)
chr3 (175-319)||(39135302-39135450)
chr3 (240-319)||(39942844-39942923)
chr3 (240-321)||(25253719-25253800)
chr3 (175-317)||(28242531-28242677)
chr3 (242-326)||(18074595-18074679)
chr3 (262-316)||(38643593-38643647)
chr3 (274-326)||(20550239-20550291)
chr3 (194-299)||(46293277-46293386)
[»] chr1 (11 HSPs)
chr1 (175-326)||(7016112-7016267)
chr1 (175-317)||(7596341-7596487)
chr1 (175-319)||(35810666-35810814)
chr1 (175-319)||(46264988-46265136)
chr1 (240-326)||(50447358-50447444)
chr1 (240-321)||(44596534-44596615)
chr1 (242-317)||(30251443-30251518)
chr1 (197-321)||(45653473-45653601)
chr1 (245-319)||(14578629-14578703)
chr1 (273-326)||(7841673-7841726)
chr1 (274-326)||(47983306-47983358)
[»] chr7 (15 HSPs)
chr7 (240-321)||(33124717-33124798)
chr7 (240-321)||(10618943-10619024)
chr7 (176-244)||(1081166-1081234)
chr7 (175-234)||(27231672-27231731)
chr7 (194-244)||(10096443-10096493)
chr7 (240-326)||(23227036-23227122)
chr7 (240-326)||(23236189-23236275)
chr7 (274-324)||(35543595-35543645)
chr7 (274-323)||(18250033-18250082)
chr7 (240-321)||(22075085-22075166)
chr7 (194-324)||(29037819-29037953)
chr7 (241-322)||(33935531-33935612)
chr7 (274-326)||(32357017-32357069)
chr7 (175-300)||(45176198-45176327)
chr7 (240-300)||(48634469-48634529)
[»] chr2 (9 HSPs)
chr2 (184-326)||(3409225-3409371)
chr2 (175-319)||(38409615-38409763)
chr2 (274-326)||(27464609-27464661)
chr2 (175-309)||(34116227-34116365)
chr2 (241-322)||(44740524-44740605)
chr2 (260-319)||(27902483-27902542)
chr2 (274-323)||(29806957-29807006)
chr2 (203-244)||(44935743-44935784)
chr2 (274-326)||(9753157-9753209)
[»] chr6 (7 HSPs)
chr6 (194-324)||(6999234-6999368)
chr6 (175-317)||(10961842-10961988)
chr6 (175-326)||(1501796-1501951)
chr6 (203-319)||(5640296-5640416)
chr6 (240-326)||(4441338-4441424)
chr6 (262-324)||(16799763-16799825)
chr6 (262-323)||(17071161-17071222)
[»] chr4 (14 HSPs)
chr4 (175-326)||(15697120-15697275)
chr4 (176-319)||(50146962-50147109)
chr4 (203-319)||(36156338-36156458)
chr4 (203-319)||(48339143-48339263)
chr4 (240-326)||(51995095-51995181)
chr4 (241-322)||(22184521-22184602)
chr4 (240-326)||(48151163-48151249)
chr4 (175-270)||(52706165-52706264)
chr4 (240-321)||(26632953-26633034)
chr4 (242-299)||(48731237-48731294)
chr4 (240-324)||(13455718-13455802)
chr4 (240-300)||(34718156-34718216)
chr4 (288-324)||(39736748-39736784)
chr4 (274-326)||(49405672-49405724)
[»] scaffold0204 (1 HSPs)
scaffold0204 (203-319)||(26665-26785)
[»] chr5 (7 HSPs)
chr5 (193-316)||(19282161-19282288)
chr5 (175-321)||(30660949-30661099)
chr5 (274-326)||(27196128-27196180)
chr5 (240-321)||(1840729-1840810)
chr5 (176-225)||(3457775-3457824)
chr5 (274-318)||(28431106-28431150)
chr5 (174-222)||(30063197-30063245)
[»] chr8 (4 HSPs)
chr8 (245-321)||(23181177-23181253)
chr8 (175-316)||(34516086-34516231)
chr8 (260-326)||(43384831-43384897)
chr8 (175-243)||(43955920-43955988)
[»] scaffold0171 (1 HSPs)
scaffold0171 (281-326)||(21145-21190)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 341 - 586
Target Start/End: Complemental strand, 33691762 - 33691517
Alignment:
Q  341 aaccctacggaggtacaatcaaacatacaccaattaccaagtgacatgtatgtatatatgtgcaggtcaagttggcacgtaaataaactataggcacatg 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33691762 aaccctacggaggtacaatcaaacatacaccaattaccaagtgacatgtatgtatatatgtgcaggtcaagttggcacgtaaataaactataggcacatg 33691663  T
Q  441 ctacattactttatctgaatatcaaaacaggtaaacgaaaaaatctaagtaattggttggttgaaaatagctagatatagtaaactatattggtgagtga 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33691662 ctacattactttatctgaatatcaaaacaggtaaacgaaaaaatctaagtaattggttggttgaaaatagctagatatagtaaactatattggtgagtga 33691563  T
Q  541 aagaaagcctcagagattaaaaagtcaggacaaacccaaggtagca 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33691562 aagaaagcctcagagattaaaaagtcaggacaaacccaaggtagca 33691517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 33692257 - 33691932
Alignment:
Q  8 gttttaaccctcacaatttatttgcgatgatatgatttactagagacatgtcactcctcagataacccctcacaaatgtctatgtaacacgagttttgtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||            ||||||||||||||||||||||||||    
T  33692257 gttttaaccctcacaatttatttgcgatgatatgatttactaga--catgtcactcctcaga------------aatgtctatgtaacacgagttttgtt 33692172  T
Q  108 gctttctaccgtagtttcatcctggtgaaataacttaannnnnnnaacaagaatgctaaacataaaaatatatataatcgagtcggctcatgactcaaac 207  Q
    ||||||||||||||||||||||| || |||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  33692171 gctttctaccgtagtttcatcctagttaaataacttaatttttttaacaagaatgttaaacataaaaatatatataatcgagtcggctcataactcaaac 33692072  T
Q  208 gagtcaaattatatatagtttaagttcaggtcatttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaa 307  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  33692071 gagtcgaattatatatagtttaagttcaggtcgtttaacgaacttactcttaagctcaagttcatttcatttagtttatgaaccaaattcaacaaatcaa 33691972  T
Q  308 ttgtcgaatcgagtctcgagcttggtcattgtcaacccta 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33691971 ttgtcgaatcgagtctcgagcttggtcattgtcaacccta 33691932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 319
Target Start/End: Complemental strand, 54393635 - 54393487
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtc----atttaacgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  ||| |||  |||||||||| || || |||||||| |||||| | ||    |||| ||||||||| | || |||||||||||    
T  54393635 atatatataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcggctcaattatttgacgaacttaattttcagctcaagttc 54393536  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
       |||||| ||| || |||||| |||||| ||||||||||||||||||    
T  54393535 ggctcatttggtttatgaaccaagttcaacgaatcaattgtcgaatcga 54393487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 9505244 - 9505163
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    |||||||||||||| | || ||||||||||||  |||||| |||||| |||||| |||||| | | ||||||||||||||||    
T  9505244 atttaacgaacttaattttcagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagt 9505163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 52199447 - 52199528
Alignment:
Q  241 tttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtc 322  Q
    ||||||||||||| | || ||||||||||||  || ||| |||||| |||||| |||||| ||| |||||||||||||||||    
T  52199447 tttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgaattaattgtcgaatcgagtc 52199528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 175 - 319
Target Start/End: Complemental strand, 33438923 - 33438775
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  ||| |||  ||||| |||| || || |||||||| || || || ||| |||    ||||||||| | || |||||||||||    
T  33438923 atatatataatcgagtcatctcgtgaaccaaacaagtcgaactacatatagttcaactttagctcaattagttgacgaacttaattttcagctcaagttc 33438824  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
       |||||| |||||| |||||| |||||| ||||||||||||||||||    
T  33438823 gactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcga 33438775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 175 - 319
Target Start/End: Original strand, 39135302 - 39135450
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcatttaa----cgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  |||||||  | ||||| || ||  || |||||||||||||||| ||||||||    |||||||| | || |||||||||||    
T  39135302 atatatataatcgagtcatctcatgaacctaacgaatcgaaccatctatagtttaagttcagctcatttaattaacgaacttaattttcagctcaagttc 39135401  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
       |||||| |||||| |||||| |||||  || |||||||||| ||||    
T  39135402 ggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcga 39135450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 39942923 - 39942844
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
    |||||||||||||| | || ||||||||||||  ||||| ||||||| |||||| ||||||| || ||||| ||||||||    
T  39942923 atttaacgaacttaattttcagctcaagttcagctcattaagttcatgaaccaagttcaacagattaattgccgaatcga 39942844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 25253719 - 25253800
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    |||||||||||||| | || ||||||||||||  |||||| |||||| |||||| |||||||| |  |||||||| ||||||    
T  25253719 atttaacgaacttaatttttagctcaagttcagctcatttggttcatgaaccaagttcaacaagtttattgtcgagtcgagt 25253800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 317
Target Start/End: Original strand, 28242531 - 28242677
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttc 270  Q
    |||||||| |||||| | ||||||||  ||| |||||| || |||||| || | |||||||| |||||||    ||||| ||| | || ||||||| |||    
T  28242531 atatatattatcgagccagctcatgaaccaaccgagtcgaactatatacagctcaagttcagatcatttatttaacgaatttaattttcagctcaaattc 28242630  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatc 317  Q
    |  |||||| |||||| ||||||||||||| | | ||||||||||||    
T  28242631 agctcatttggttcatgaaccaaattcaacgagttaattgtcgaatc 28242677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 326
Target Start/End: Original strand, 18074595 - 18074679
Alignment:
Q  242 ttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||||||||| | || || |||| ||||  ||||||||||||| || |||||||||| ||| |||| || |||||||||||||    
T  18074595 ttaacgaacttaattttcagttcaaattcaactcatttagttcatgaaacaaattcaacgaattaattatcaaatcgagtctcga 18074679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 38643647 - 38643593
Alignment:
Q  262 ctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaat 316  Q
    ||||||||||  || ||| |||||| ||||||||||||||||| |||||||||||    
T  38643647 ctcaagttcagctcttttggttcatgaaccaaattcaacaaattaattgtcgaat 38643593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 20550291 - 20550239
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||| |||| | |||||| ||||||||||||||| ||||||||||| ||||    
T  20550291 tcatttggttcgtgaaccaagttcaacaaatcaattatcgaatcgagtatcga 20550239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 46293386 - 46293277
Alignment:
Q  194 ctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcatttaa----cgaacttactcttaagctcaagttcatttcatttagttcataaa 289  Q
    |||||||  ||||||| || || ||| |||||||||||||||  ||||||||    |||||||| | || |||||||||||   |||||| |||||| ||    
T  46293386 ctcatgaaccaaacgaatcgaactatttatagtttaagttcaactcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaa 46293287  T
Q  290 ccaaattcaa 299  Q
    ||||||||||    
T  46293286 ccaaattcaa 46293277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 7016267 - 7016112
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcatt----taacgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||| |||||||| |||||||||| ||   ||||||| | ||| |||| | |||    |||| |||||| | || |||||||||||    
T  7016267 atatatataatcgagtcgtctcatgacccaaacgagtcgaaccgtatatagctcaagctcagcttattaggttaacaaacttagttttgagctcaagttc 7016168  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |  |||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  7016167 agctcatttggttcatgaaccaagttcaacaaatcaattgtcgaatcgagtctcga 7016112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 175 - 317
Target Start/End: Original strand, 7596341 - 7596487
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtc----atttaacgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  ||||||| ||||||||||| || || |||||||| |||||||| ||    | ||| |||||||| | || |||||||||||    
T  7596341 atatatataatcgagtcatctcatgaatcaaacgagtcgaactacatatagttcaagttcagctcaattagttagcgaacttaattttcagctcaagttc 7596440  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatc 317  Q
       |||||| ||||||||||||| ||| || |||||||| |||||||    
T  7596441 ggctcatttggttcataaaccaagttcgacgaatcaattatcgaatc 7596487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 175 - 319
Target Start/End: Original strand, 35810666 - 35810814
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtc----atttaacgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  ||| |||  |||||||||| || || |||||||| |||||| | ||    |||| ||||||||| | || |||||||||||    
T  35810666 atatatataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcggctcaattatttgacgaacttaattttcagctcaagttc 35810765  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
       |||||| |||||| |||||| |||||| ||||||||||||||||||    
T  35810766 ggctcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcga 35810814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 175 - 319
Target Start/End: Complemental strand, 46265136 - 46264988
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcatttaa----cgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  |||||||  |||||||||| |  ||||||||||| |||||||| ||| |||     |||||||| | || |||||||||||    
T  46265136 atatatataatcgagtcatctcatgaaccaaacgagtcgacctatatatagttcaagttcagctcaattagttagcgaacttaattttcagctcaagttc 46265037  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
       ||||||||||||| |||||| ||| || |||||||| |||||||||    
T  46265036 ggctcatttagttcatgaaccaagttcgacgaatcaattatcgaatcga 46264988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 240 - 326
Target Start/End: Original strand, 50447358 - 50447444
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||||||||||| | ||||| ||||||||   |||||| ||||||||||||| || ||| ||| |||| ||||||||||||||||    
T  50447358 atttaacgaacttaattttaagttcaagttcggctcatttggttcataaaccaagtttaacgaattaattatcgaatcgagtctcga 50447444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 44596534 - 44596615
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    |||||||||||||| | || || |||||||||  |||||| |||||| ||||||||||||| | | ||||||||||||||||    
T  44596534 atttaacgaacttaattttcagttcaagttcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcgagt 44596615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 30251443 - 30251518
Alignment:
Q  242 ttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatc 317  Q
    |||||||||||| | || |||||||||||| |||||||||||||| ||||||| ||||| | | |||| |||||||    
T  30251443 ttaacgaacttaatttttagctcaagttcaattcatttagttcatgaaccaaactcaacgagttaattatcgaatc 30251518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 197 - 321
Target Start/End: Complemental strand, 45653601 - 45653473
Alignment:
Q  197 atgactcaaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttcatttcatttagttcataaacca 292  Q
    |||| ||||||||||| || ||||||||||| | |||||| |||||||    |||||||||   || |||||||||||   |||||| |||||| |||||    
T  45653601 atgaatcaaacgagtcgaactatatatagttcatgttcagttcatttagctaacgaacttaacttttagctcaagttcggctcatttggttcatgaacca 45653502  T
Q  293 aattcaacaaatcaattgtcgaatcgagt 321  Q
    | |||||| ||  ||||||||||||||||    
T  45653501 agttcaacgaaataattgtcgaatcgagt 45653473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 14578703 - 14578629
Alignment:
Q  245 acgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
    ||||||||| | || ||||| |||||   |||||| |||||| |||||| |||||||||||||||||| ||||||    
T  14578703 acgaacttaattttcagctccagttcggctcatttggttcatgaaccaagttcaacaaatcaattgtctaatcga 14578629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 7841673 - 7841726
Alignment:
Q  273 ttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    ||||||| |||||| |||||| |||||| ||| |||| ||||||||||||||||    
T  7841673 ttcatttggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcga 7841726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 47983306 - 47983358
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||| |||| | |||||| ||||||||||||||| ||||||||| ||||||    
T  47983306 tcatttggttcgtgaaccaagttcaacaaatcaattatcgaatcgaatctcga 47983358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 33124717 - 33124798
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    |||||||||||||| | || |||||||||||| ||||||| ||||||||||||| |||||| | | ||||||||||||||||    
T  33124717 atttaacgaacttaattttcagctcaagttcaattcatttggttcataaaccaagttcaacgagttaattgtcgaatcgagt 33124798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 10618943 - 10619024
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    |||||||||||||| | || ||||||||||||  ||||||||||||| |||||| |||||| | | ||||||||||||||||    
T  10618943 atttaacgaacttaattttcagctcaagttcagctcatttagttcatgaaccaagttcaacgagttaattgtcgaatcgagt 10619024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 1081166 - 1081234
Alignment:
Q  176 tatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattta 244  Q
    |||||||||||||||| | ||||||  |||| |||||||| ||||||||| | ||||||||||||||||    
T  1081166 tatatataatcgagtcaggtcatgaaccaaatgagtcaaactatatatagctcaagttcaggtcattta 1081234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 27231731 - 27231672
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttc 234  Q
    |||||||||||||||||  |||||||  ||||||||||||| || |||||| ||||||||    
T  27231731 atatatataatcgagtcatctcatgaaccaaacgagtcaaactacatatagcttaagttc 27231672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 10096443 - 10096493
Alignment:
Q  194 ctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattta 244  Q
    ||||||| ||||||||| | |||||||| |||||||||||||| |||||||    
T  10096443 ctcatgaatcaaacgagccgaattatatgtagtttaagttcagctcattta 10096493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 23227122 - 23227036
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||||||||||| | || ||||||||||||  ||||||  |||||  ||||| ||||||||   |||||||||||||||| ||||    
T  23227122 atttaacgaacttaattttcagctcaagttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagtttcga 23227036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 23236275 - 23236189
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||||||||||| | || ||||||||||||  ||||||  |||||  ||||| ||||||||   |||||||||||||||| ||||    
T  23236275 atttaacgaacttaattttcagctcaagttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagtttcga 23236189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 35543645 - 35543595
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctc 324  Q
    ||||||||||||| |||||| |||||| |||||||| |||||| |||||||    
T  35543645 tcatttagttcatgaaccaagttcaacgaatcaattatcgaatggagtctc 35543595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 18250082 - 18250033
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtct 323  Q
    |||||| |||||| |||||| |||||| |||||||| |||||||||||||    
T  18250082 tcatttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtct 18250033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 22075085 - 22075166
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    |||||||||||||| | || ||||||||||||  |||||| |||| | |||||  |||||| | | ||||||||||||||||    
T  22075085 atttaacgaacttaattttcagctcaagttcagctcatttggttcgtgaaccacgttcaacgagttaattgtcgaatcgagt 22075166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 324
Target Start/End: Complemental strand, 29037953 - 29037819
Alignment:
Q  194 ctcatgactcaaacgagtcaaattatatatagtttaagttcaggtca----tttaacgaacttactcttaagctcaagttcatttcatttagttcataaa 289  Q
    ||||||| ||||||||||| ||  ||||||||||||| ||||  |||    ||||||| ||||| | || | ||||||||| | |||||| |||||| ||    
T  29037953 ctcatgaatcaaacgagtcgaaccatatatagtttaaattcaactcatttgtttaacggacttaattttcaactcaagttcgtctcatttggttcatgaa 29037854  T
Q  290 ccaaattcaacaaatcaattgtcgaatcgagtctc 324  Q
    | || |||| ||||| ||||  |||||||||||||    
T  29037853 caaagttcagcaaattaattaccgaatcgagtctc 29037819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 33935531 - 33935612
Alignment:
Q  241 tttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtc 322  Q
    ||||||||||||| | || ||||||||||||  || ||| |||||| |||||| |||||| | | |||| ||||||||||||    
T  33935531 tttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattatcgaatcgagtc 33935612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 32357017 - 32357069
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    ||||||||||||| || ||| |||||| ||| |||| ||||||||||||||||    
T  32357017 tcatttagttcatgaatcaagttcaacgaattaattatcgaatcgagtctcga 32357069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 300
Target Start/End: Original strand, 45176198 - 45176327
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcat----ttaacgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  |||||||  | |||||||| |||||||| ||| | |||||||  ||||    |||||||||||| | || |||| ||||||    
T  45176198 atatatataatcgagtcatctcatgaacctaacgagtcgaattatatgtagctcaagttcaactcatttaattaacgaacttaattttcagctaaagttc 45176297  T
Q  271 atttcatttagttcataaaccaaattcaac 300  Q
    |  || ||| |||||| |||||| ||||||    
T  45176298 agctcgtttggttcatgaaccaagttcaac 45176327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 48634469 - 48634529
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaac 300  Q
    |||||||||||||| | || ||||||||||||  |||||| |||||| |||||| ||||||    
T  48634469 atttaacgaacttaatttttagctcaagttcaactcatttggttcatgaaccaagttcaac 48634529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 184 - 326
Target Start/End: Complemental strand, 3409371 - 3409225
Alignment:
Q  184 atcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttcatttcattt 279  Q
    |||||||| |||||||| |||| |||||| || |||||| || | || ||||| |||||||    ||||||||| | || |||||||||||| |||||||    
T  3409371 atcgagtcagctcatgaatcaatcgagtcgaactatatacagctcaaattcagctcatttatttaacgaacttaattttcagctcaagttcagttcattt 3409272  T
Q  280 agttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
     |||||| |||||| |||||| | | |||||||||||||||| ||||    
T  3409271 ggttcatgaaccaagttcaacgagttaattgtcgaatcgagtttcga 3409225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 319
Target Start/End: Complemental strand, 38409763 - 38409615
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttc 270  Q
    ||||||||||||| |||  ||| |||  |||||||| | || ||||||||||| |||||||| ||| |||    || |||||| | || |||||||||||    
T  38409763 atatatataatcgggtcatctcgtgaaccaaacgagccgaactatatatagttaaagttcagctcaattagttcacaaacttaattttcagctcaagttc 38409664  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
       |||||| |||||| |||||||||| || ||||||||||||||||||    
T  38409663 ggctcatttggttcatgaaccaaattcgacgaatcaattgtcgaatcga 38409615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 27464661 - 27464609
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||| |||||| |||||||||||||||||||||| ||||||| ||||||||    
T  27464661 tcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcga 27464609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 309
Target Start/End: Complemental strand, 34116365 - 34116227
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtca----tttaacgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  | |||||  |||||||||| || || |||||| | |||||||| |||    |||| |||||||| | ||||||||||||||    
T  34116365 atatatataatcgagtcatcacatgaaccaaacgagtcgaactacatatagctcaagttcagctcaattatttagcgaacttaattttaagctcaagttc 34116266  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaatt 309  Q
       |||||| |||||| ||| || ||| |||||||||||    
T  34116265 ggctcatttggttcatgaactaagttcgacaaatcaatt 34116227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 44740605 - 44740524
Alignment:
Q  241 tttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtc 322  Q
    ||||||||||||| | || ||||||||||||  || ||| |||||| |||||| |||||| | | |||||||||||||||||    
T  44740605 tttaacgaacttaatttttagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtc 44740524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 27902542 - 27902483
Alignment:
Q  260 agctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
    |||||||||||  ||||||| |||||| |||||| ||| || ||||||||||||||||||    
T  27902542 agctcaagttcggttcattttgttcatgaaccaagttcgacgaatcaattgtcgaatcga 27902483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 29806957 - 29807006
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtct 323  Q
    |||||| |||| |||||||| |||||| |||||||| |||||||||||||    
T  29806957 tcatttggttcgtaaaccaagttcaacgaatcaattatcgaatcgagtct 29807006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 44935743 - 44935784
Alignment:
Q  203 caaacgagtcaaattatatatagtttaagttcaggtcattta 244  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  44935743 caaacgagtcaaactatatataatttaagttcagctcattta 44935784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 9753157 - 9753209
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||| |||||| ||||||| | ||| |||||||||||||||||| ||||||    
T  9753157 tcatttggttcatgaaccaaacttaacgaatcaattgtcgaatcgaatctcga 9753209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 324
Target Start/End: Original strand, 6999234 - 6999368
Alignment:
Q  194 ctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattt----aacgaacttactcttaagctcaagttcatttcatttagttcataaa 289  Q
    |||||||  ||| |||||| || |||||| |||| |||||||| ||||||    ||| |||||| | || ||||||||||||  ||||||||||||| ||    
T  6999234 ctcatgaaccaaccgagtcgaactatataaagttcaagttcagttcatttgtttaacaaacttaattttcagctcaagttcagctcatttagttcattaa 6999333  T
Q  290 ccaaattcaacaaatcaattgtcgaatcgagtctc 324  Q
    |||| |||||| ||| |||| ||||||||||||||    
T  6999334 ccaagttcaacgaattaattatcgaatcgagtctc 6999368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 317
Target Start/End: Complemental strand, 10961988 - 10961842
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  ||| |||  |||||||||| || || |||||||| |||||||| ||| |||    ||||||||| | || ||||||| |||    
T  10961988 atatatataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctcaattagttgacgaacttaattttcagctcaaattc 10961889  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatc 317  Q
       |||||| |||||| |||||| |||||| ||||||||||||||||    
T  10961888 gactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatc 10961842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 326
Target Start/End: Original strand, 1501796 - 1501951
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattt----aacgaacttactcttaagctcaagttc 270  Q
    |||||||| |||||||| ||||||||  ||| |||||| || |||||| || |||||||  | ||||||    |||||||||| | || |||||||||||    
T  1501796 atatatattatcgagtcagctcatgaaccaaccgagtcgaactatatacagcttaagtttggctcatttatttaacgaacttaattttcagctcaagttc 1501895  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
      ||||||| |||||| ||| || |||||| | | ||||||| |||||||| ||||    
T  1501896 ggttcatttggttcatgaacgaagttcaacgagttaattgtcaaatcgagtttcga 1501951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 319
Target Start/End: Complemental strand, 5640416 - 5640296
Alignment:
Q  203 caaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattca 298  Q
    |||||||||| || ||||||||||| |||||||| ||| |||    ||||||||| | || || ||||||||   |||||| |||||| |||||| |||     
T  5640416 caaacgagtcgaactatatatagttcaagttcagctcaattagttgacgaacttaattttcagttcaagttcggctcatttggttcatgaaccaagttcg 5640317  T
Q  299 acaaatcaattgtcgaatcga 319  Q
    || |||||||| |||||||||    
T  5640316 acgaatcaattatcgaatcga 5640296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 4441424 - 4441338
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||||||||||| | || | ||||||||||  ||||||||||| | |||||| |||||| |   |||||||||||||||| ||||    
T  4441424 atttaacgaacttaattttcaactcaagttcagctcatttagttcgtgaaccaagttcaacgagctaattgtcgaatcgagtttcga 4441338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 16799825 - 16799763
Alignment:
Q  262 ctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctc 324  Q
    ||||||||||| |||||| ||| ||||||||||||||||  ||||||| || |||||| ||||    
T  16799825 ctcaagttcatctcatttggttgataaaccaaattcaacggatcaattatcaaatcgaatctc 16799763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 17071222 - 17071161
Alignment:
Q  262 ctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtct 323  Q
    ||||||||||| |||||| ||| ||||||||| |||||   ||||||| |||||||||||||    
T  17071222 ctcaagttcatctcatttggttgataaaccaagttcaagggatcaattatcgaatcgagtct 17071161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 15697275 - 15697120
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcat----ttaacgaacttactcttaagctcaagttc 270  Q
    |||||||||||||| ||  |||||||  ||||||||||  | ||| | ||||| | |||||| ||||    |||||||||||| | || |||||||||||    
T  15697275 atatatataatcgaatcaactcatgaaccaaacgagtcggactatgtttagttcatgttcagctcattaagttaacgaacttaatttttagctcaagttc 15697176  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |  | |||| |||||| || ||| |||||| ||||||||||||| |||||||||||    
T  15697175 agcttatttggttcatgaatcaagttcaacgaatcaattgtcgagtcgagtctcga 15697120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 176 - 319
Target Start/End: Complemental strand, 50147109 - 50146962
Alignment:
Q  176 tatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttca 271  Q
    ||||||||||||||||  ||| |||  |||||||| | || || |||||  |||||||||| ||| |||    ||||||||| | || ||||||||| |     
T  50147109 tatatataatcgagtcatctcgtgaaccaaacgagccgaactacatataacttaagttcagctcaattagttcacgaacttaattttcagctcaagtccg 50147010  T
Q  272 tttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcga 319  Q
     ||||||| |||||| |||||| |||||| ||||||||||||||||||    
T  50147009 gttcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcga 50146962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 319
Target Start/End: Complemental strand, 36156458 - 36156338
Alignment:
Q  203 caaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattca 298  Q
    |||||||||| || || |||||||| |||||||| ||| |||    ||||||||| | || |||||||||||   |||||| |||||  |||||| ||||    
T  36156458 caaacgagtcgaactacatatagttcaagttcagctcaattagttgacgaacttaattttcagctcaagttcggctcatttggttcaagaaccaagttca 36156359  T
Q  299 acaaatcaattgtcgaatcga 319  Q
    || ||||||||||||||||||    
T  36156358 acgaatcaattgtcgaatcga 36156338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 319
Target Start/End: Complemental strand, 48339263 - 48339143
Alignment:
Q  203 caaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattca 298  Q
    |||||||||| || || |||||| |||||||||| ||| |||    ||||||||| | || |||||||||||   ||||||  ||||| |||||| ||||    
T  48339263 caaacgagtcgaactacatatagcttaagttcagctcaattagttgacgaacttaattttcagctcaagttcgactcatttgattcatgaaccaagttca 48339164  T
Q  299 acaaatcaattgtcgaatcga 319  Q
    |||||||| ||||||||||||    
T  48339163 acaaatcagttgtcgaatcga 48339143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 326
Target Start/End: Original strand, 51995095 - 51995181
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    ||||||| |||||| | || |||||||||||   |||||| |||||| |||||| |||||| ||| |||| ||||||||||||||||    
T  51995095 atttaacaaacttaattttgagctcaagttcggctcatttggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcga 51995181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 22184521 - 22184602
Alignment:
Q  241 tttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtc 322  Q
    ||||||||||||| | || ||||||||||||  || ||| |||||| |||||| |||||| | | |||||||||||||||||    
T  22184521 tttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtc 22184602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 48151249 - 48151163
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||||||||||| | || ||||||||||||  |||||| |||  | |||||| ||||||||   |||||||||||||||| ||||    
T  48151249 atttaacgaacttaattttcagctcaagttcagctcatttggtttgtgaaccaagttcaacaagataattgtcgaatcgagtttcga 48151163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 52706165 - 52706264
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcat----ttaacgaacttactcttaagctcaagttc 270  Q
    ||||||||||||||||| | || ||| ||||||||||| || ||||||||  | |||||||  ||||    |||||||||||| |||| |||||||||||    
T  52706165 atatatataatcgagtcagttcgtgaatcaaacgagtcgaactatatataactcaagttcaactcatttagttaacgaacttaatctttagctcaagttc 52706264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 26632953 - 26633034
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    |||||||||||||| | || ||||||||||||  |||||| ||| || | |||| |||||| | | ||||||||||||||||    
T  26632953 atttaacgaacttaattttcagctcaagttcagctcatttggttaatgagccaagttcaacgagttaattgtcgaatcgagt 26633034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 48731294 - 48731237
Alignment:
Q  242 ttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaa 299  Q
    |||||||||||| | || |||||||||||| || |||| |||||| ||||||||||||    
T  48731294 ttaacgaacttaatttttagctcaagttcagtttatttggttcatgaaccaaattcaa 48731237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 13455718 - 13455802
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctc 324  Q
    |||||||||||||| | || ||||||||||    |||||| ||||||||| ||| |||||| ||| |||| ||||||||| ||||    
T  13455718 atttaacgaacttaattttgagctcaagttggactcatttggttcataaatcaagttcaacgaattaattatcgaatcgaatctc 13455802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 34718156 - 34718216
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaac 300  Q
    |||||||||| ||| | || |||| ||||||   |||||||||||||||||||||||||||    
T  34718156 atttaacgaaattaattttcagctgaagttcgactcatttagttcataaaccaaattcaac 34718216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 39736748 - 39736784
Alignment:
Q  288 aaccaaattcaacaaatcaattgtcgaatcgagtctc 324  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  39736748 aaccaaattcaacgaatcaattatcgaatcgagtctc 39736784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 49405724 - 49405672
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||| ||||||||||||| |||||| ||||||||  |||||||||| ||||    
T  49405724 tcatttggttcataaaccaagttcaacgaatcaattaccgaatcgagtttcga 49405672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 319
Target Start/End: Complemental strand, 26785 - 26665
Alignment:
Q  203 caaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattca 298  Q
    |||||||||| || || |||||| |||||||||| ||| |||    ||||||||| | || |||||||||||   ||||||  ||||| |||||| ||||    
T  26785 caaacgagtcgaactacatatagcttaagttcagctcaattagttgacgaacttaattttcagctcaagttcgactcatttgattcatgaaccaagttca 26686  T
Q  299 acaaatcaattgtcgaatcga 319  Q
    |||||||| ||||||||||||    
T  26685 acaaatcagttgtcgaatcga 26665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 316
Target Start/End: Complemental strand, 19282288 - 19282161
Alignment:
Q  193 gctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcat----ttaacgaacttactcttaagctcaagttcatttcatttagttcataa 288  Q
    |||||||| |||| |||||| || |||||| |||| |||||||| ||||    ||||||||| || | || ||||||||||||  |||||| |||||| |    
T  19282288 gctcatgaatcaaccgagtcgaactatatacagttcaagttcagctcatctacttaacgaacctaattttcagctcaagttcagctcatttggttcatga 19282189  T
Q  289 accaaattcaacaaatcaattgtcgaat 316  Q
    ||||| |||||| | | |||||||||||    
T  19282188 accaagttcaacgagttaattgtcgaat 19282161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 321
Target Start/End: Complemental strand, 30661099 - 30660949
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcat----ttaacgaacttactcttaagctcaagttc 270  Q
    ||||||||||||||||| | ||||||  |||||||||| || ||||||||||| | ||||   ||||    ||||| |||||| | || | || || |||    
T  30661099 atatatataatcgagtcagttcatgaaccaaacgagtcgaactatatatagttcatgttcgactcatataattaacaaacttaattttcaacttaaattc 30661000  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    |  ||||||||||||| ||| || ||||| ||||||||| |||||||||||    
T  30660999 agctcatttagttcatgaactaagttcaataaatcaattatcgaatcgagt 30660949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 27196128 - 27196180
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||| |||||| ||||||||| ||| |||||||| ||||||||||||||||    
T  27196128 tcatttggttcatgaaccaaatttaacgaatcaattatcgaatcgagtctcga 27196180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 1840810 - 1840729
Alignment:
Q  240 atttaacgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    |||| ||||||||| | || ||||||||||||  |||||| |||||| |||||| |||||| | | ||||||||||| ||||    
T  1840810 atttcacgaacttaattttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaattgagt 1840729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 3457775 - 3457824
Alignment:
Q  176 tatatataatcgagtcggctcatgactcaaacgagtcaaattatatatag 225  Q
    ||||||||||||||| |||||||||  ||||||||||| | |||||||||    
T  3457775 tatatataatcgagttggctcatgaaccaaacgagtcagactatatatag 3457824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 28431106 - 28431150
Alignment:
Q  274 tcatttagttcataaaccaaattcaacaaatcaattgtcgaatcg 318  Q
    ||||||||||||| |||||| |||||||| |||||| ||||||||    
T  28431106 tcatttagttcatgaaccaagttcaacaattcaattatcgaatcg 28431150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 30063197 - 30063245
Alignment:
Q  174 aatatatataatcgagtcggctcatgactcaaacgagtcaaattatata 222  Q
    |||||||||||||||||| | |||||| | ||||||||| |||||||||    
T  30063197 aatatatataatcgagtcagttcatgaattaaacgagtcgaattatata 30063245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 23181177 - 23181253
Alignment:
Q  245 acgaacttactcttaagctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagt 321  Q
    ||||||||| | || || ||||||||   |||||| |||||| |||||||||| || ||||||||||||||||||||    
T  23181177 acgaacttaattttcagttcaagttcggctcatttggttcatgaaccaaattcgacgaatcaattgtcgaatcgagt 23181253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 316
Target Start/End: Original strand, 34516086 - 34516231
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattta----acgaacttactcttaagctcaagttc 270  Q
    |||||||||||||||||  ||| |||  |||||||||| || || |||||||| |||||||| ||| |||    ||||||||| | || |||||||||||    
T  34516086 atatatataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctcaattaatcgacgaacttaattttcagctcaagttc 34516185  T
Q  271 atttcatttagttcataaaccaaattcaacaaatcaattgtcgaat 316  Q
       |||||| ||| || || ||| |||||  |||||||||||||||    
T  34516186 ggctcatttggttgatgaatcaagttcaatgaatcaattgtcgaat 34516231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 43384831 - 43384897
Alignment:
Q  260 agctcaagttcatttcatttagttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    ||||||||||||  |||||| |||||| |||||| |||||| ||| |||| ||||||||| ||||||    
T  43384831 agctcaagttcaactcatttggttcatgaaccaacttcaacgaattaattatcgaatcgaatctcga 43384897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 43955988 - 43955920
Alignment:
Q  175 atatatataatcgagtcggctcatgactcaaacgagtcaaattatatatagtttaagttcaggtcattt 243  Q
    ||||||||||||||||   || |||| |||||  |||| |||||||||||| |||||||||| ||||||    
T  43955988 atatatataatcgagttaacttatgaatcaaataagtcgaattatatatagcttaagttcagctcattt 43955920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 21145 - 21190
Alignment:
Q  281 gttcataaaccaaattcaacaaatcaattgtcgaatcgagtctcga 326  Q
    |||||| |||||| |||||| |||||||| ||||||||||||||||    
T  21145 gttcatgaaccaagttcaacgaatcaattatcgaatcgagtctcga 21190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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