View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359-Insertion-3 (Length: 480)
Name: NF0359-Insertion-3
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359-Insertion-3 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 13796108 - 13796269
Alignment:
| Q |
11 |
attatgcaagaccaaattttatcacctttttcaaactaaaagcataggggttgttgtgccattttttaagtatagaaatcatataaaatgtcatgccgtg |
110 |
Q |
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| T |
13796108 |
attatacaagaccaaattttatcacctttttcaaactaaaagcattggggttgttgtgcctttttttaagtatagaaatcaaatacaatgtcatgccctg |
13796207 |
T |
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| Q |
111 |
tgctccctttaactgataactacgnnnnnnnnnagtttaatttagtttaaatgattgaatcaaagtgtttgtc |
183 |
Q |
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| T |
13796208 |
tgctccctttaactgataactac-----------gttttttttagtttaaatgattgaatcaaagtgtttgtc |
13796269 |
T |
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Target: scaffold0054 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 27795 - 27966
Alignment:
| Q |
11 |
attatgcaagaccaaattttatcacctttttcaaactaaaagcataggggttgttgtgccattttttaagtatagaaatcatataaaatgtcatgccgtg |
110 |
Q |
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| T |
27795 |
attatacaagaccaatttttatcacctttttcaaactaaacgcattggggttgttgtgcctttttttaagtatagaaatcaaatacaatgtcatgccccg |
27894 |
T |
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| Q |
111 |
tgctccctttaactgataactacgnnnnnnnnnagtttaatttagtttaaatgattgaatcaaagtgtttgtc |
183 |
Q |
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| T |
27895 |
tgctccctttaactgatgactacg-ttttttttagtttaatttagtttaaatgattgaatcaaagtgtttgtc |
27966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 47287652 - 47287716
Alignment:
| Q |
164 |
attgaatcaaagtgtttgtcttaccatgcatagaggcatgattgttaatcgttgttttttggtat |
228 |
Q |
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| T |
47287652 |
attgaagcaaagtgtttgtctgaccatgcatagaggtatgattgttaatcgttggtttttagtat |
47287716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 35430970 - 35431034
Alignment:
| Q |
11 |
attatgcaagaccaaattttatcacctttttcaaactaaaagcataggggttgttgtgccattttt |
76 |
Q |
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| T |
35430970 |
attatgcaagaccaaattt-atcacattttacaaactaaaatcattggggttgttgtgccattttt |
35431034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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