View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359-Insertion-4 (Length: 393)
Name: NF0359-Insertion-4
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 5400558 - 5400173
Alignment:
| Q |
8 |
atttagatatcaaaattgtttttacccaaaatcctatcctagtattattttagattccatgtttcccattggcaaaagggataaatatttgttcttagat |
107 |
Q |
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| T |
5400558 |
atttagatatcaaaattgtttttacccaaaatcctatcctagtattattttagattccatgtttcccattggcaaaagggataaatatttgttcttagat |
5400459 |
T |
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| Q |
108 |
tccatgttttagagaattactcatcagtagcaattatgcgatcaaaactgccacgattatgagaggacaataaactttacttacattgtatgtcaatcat |
207 |
Q |
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| T |
5400458 |
tccatgttttagagaattactcatcagtagcaattatgcgatcaaaactgccacgattatgagaggacaataaattttacttacattttatatcaatcat |
5400359 |
T |
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| Q |
208 |
gatggcatggataatgaaaatcataaaaatccaaaaacattttcatatcttttttagaacatgaaagaaacaaacaacacactagtaattgtccaatgac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5400358 |
gatggcatggataatgaaaatcataaaaatccaaaaacattttcatatcttttttagaaaatgaaagaaacaaacaacacactagtaattgtccaatgac |
5400259 |
T |
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| Q |
308 |
cacatgtaaattttgcaaagccttttcactctgagtaacgctctgtttcatctgaaaaagtgttttaaagttcaacttttaaaatc |
393 |
Q |
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| T |
5400258 |
cacatgtaaattttgcaaagccttttcactctgagtaacgctctgtttcatctgaaaaagtgttttaaagttcaacttttaaaatc |
5400173 |
T |
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