View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359_high_6 (Length: 381)
Name: NF0359_high_6
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 23 - 371
Target Start/End: Complemental strand, 13886619 - 13886264
Alignment:
| Q |
23 |
ttaggtgattttatttgtacatataactttcttattgttgtgactttgtgtgaattgataataagtggacatatttcattctaattattttcatctatca |
122 |
Q |
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| T |
13886619 |
ttaggtgattttatttgtacatataactttcttattgttgtgactttgtgtgaattaataataagtgtacatatttcattctaattattttcatctatca |
13886520 |
T |
|
| Q |
123 |
tcgtatttaattatttat-------ataattatcttggtatcttagtaatattgggattctttttcctcatatgtgtatttgttatggtgtgaaaattta |
215 |
Q |
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| T |
13886519 |
tcgtatttaattatttattttataaataattatcttggtatcttagtaatattgtgattctttttcctcatatgtgtatttgttatggtgtgaaaattta |
13886420 |
T |
|
| Q |
216 |
catgtatttatttgatttaggagtaatatgaaataatagtagtttaatatgagtatttagggactaagattttagttatgaacgagtaagtgaataactt |
315 |
Q |
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| T |
13886419 |
catgtacttatttgatttaggagtaatatgaaataatagtagtttactatgagtatttagagactaagattttagttatggacgagtaagtgaataactt |
13886320 |
T |
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| Q |
316 |
ttgtttttagaacttgaatcaatagaaaaagtagacaagaaccagaatactctctg |
371 |
Q |
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| T |
13886319 |
ttgtttttagaacttgaatcaatagaaaaagtagacaagaaccagtatactttctg |
13886264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 291
Target Start/End: Complemental strand, 12162628 - 12162475
Alignment:
| Q |
141 |
ataattatcttggtatcttagtaatattgggattctttttcctcatatgtgtatttgttatggtgtga-aaatttacatgtatttatttgatttagg-ag |
238 |
Q |
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| T |
12162628 |
ataattactttggtgtcttagtaattgtgtgatcatttttccttatatgtgtaattgttatggtgtgataattttatacatatttatttgatttaggaag |
12162529 |
T |
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| Q |
239 |
taatatgaaataatagtagtttaatatgagta-tttagggactaagattttagt |
291 |
Q |
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|||||| |||| ||||||||||| ||||||| ||||| |||||| | |||||| |
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| T |
12162528 |
taatataaaatgatagtagtttagcatgagtactttagagactaatactttagt |
12162475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 12383353 - 12383457
Alignment:
| Q |
141 |
ataattatcttggtatcttagtaatattgggattctttttcctcatatgtgtatttgttatggtgtga-aaatttacatgtatttatttgatttaggagt |
239 |
Q |
| |
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||||||||| ||| |||||||||||||| |||| |||||||| ||||||||| |||||||||||||| | |||| | |||||||| ||||||| ||| |
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| T |
12383353 |
ataattatcccggtgtcttagtaatattgtgattatttttccttatatgtgtagttgttatggtgtgatgattttatacatatttattcgatttagaagt |
12383452 |
T |
|
| Q |
240 |
aatat |
244 |
Q |
| |
|
||||| |
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|
| T |
12383453 |
aatat |
12383457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 31411283 - 31411187
Alignment:
| Q |
154 |
tatcttagtaatattgggattctttttcctcatatgtgtatttgttatggtgtgaaaattt-acatgtatttatttgatttaggagtaatatgaaat |
249 |
Q |
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||||||||||||||| |||| || | ||| |||||| |||||||||| |||||| ||||| | |||||||||||||||||| ||||||||| |||| |
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| T |
31411283 |
tatcttagtaatattttgattattgtcccttatatgtatatttgttatcgtgtgataattttatatgtatttatttgatttatgagtaatataaaat |
31411187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 5044181 - 5044296
Alignment:
| Q |
27 |
gtgattttatttgtacatataactttcttattgttgtgactttgtgtgaattgataataa--gtggacatatttcattctaattattttcatctatcatc |
124 |
Q |
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|||||||||||||||||| || || |||||| ||||||| | |||||||| |||| || ||| |||||||| ||| ||||||||| | |||||||| |
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| T |
5044181 |
gtgattttatttgtacatgtattttgcttattattgtgacatcttgtgaattaataaaaactgtgtacatattttattttaattatttctaactatcatc |
5044280 |
T |
|
| Q |
125 |
gtatttaattatttat |
140 |
Q |
| |
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|||||||| |||||| |
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|
| T |
5044281 |
ttatttaatcatttat |
5044296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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