View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359_low_17 (Length: 309)
Name: NF0359_low_17
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359_low_17 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 34986 - 35150
Alignment:
| Q |
81 |
caacacagccaaggatccctcaaaatcgtaacagaccatatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt |
180 |
Q |
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| T |
34986 |
caacacatccaaggatccctcaaaattggaacagaccatatgcgaacacgaatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt |
35085 |
T |
|
| Q |
181 |
ccatcaccactcacgttgcgagaaaccataacctcaccaagagagaaaacaaatctcatatcaac |
245 |
Q |
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| T |
35086 |
ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaac |
35150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 81 - 245
Target Start/End: Complemental strand, 12485491 - 12485327
Alignment:
| Q |
81 |
caacacagccaaggatccctcaaaatcgtaacagaccatatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt |
180 |
Q |
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| T |
12485491 |
caacacatccaaggatccctcaaaattggaacagaccatatgcgaacacgaatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt |
12485392 |
T |
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| Q |
181 |
ccatcaccactcacgttgcgagaaaccataacctcaccaagagagaaaacaaatctcatatcaac |
245 |
Q |
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| T |
12485391 |
ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaac |
12485327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 12469331 - 12469202
Alignment:
| Q |
117 |
catatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaccataacctca |
216 |
Q |
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||||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||| || ||||||| |
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| T |
12469331 |
catatacgaacattgatttggtatcaccaatcgtgacatattcatcaccaccatcgtgaccagtccatcacaacccacgttgcgagaaaacaaaacctca |
12469232 |
T |
|
| Q |
217 |
ccaagagagaaaacaaatctcatatcaaca |
246 |
Q |
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||||||||||||||| |||| |||||||| |
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| T |
12469231 |
ccaagagagaaaacatatctggtatcaaca |
12469202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 12466687 - 12466559
Alignment:
| Q |
117 |
catatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaccataacctca |
216 |
Q |
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| T |
12466687 |
catatacgaacattgatttggtatcaccaatcgtgacatat-catcaccaccatcgtgaccagtccatcacaacccacattgcgagaaaacaaaacctca |
12466589 |
T |
|
| Q |
217 |
ccaagagagaaaacaaatctcatatcaaca |
246 |
Q |
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| T |
12466588 |
ccaagagagaaaacatatctggtatcaaca |
12466559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 47518480 - 47518421
Alignment:
| Q |
156 |
attcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaccataacctc |
215 |
Q |
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| T |
47518480 |
attcatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctc |
47518421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 27170111 - 27170059
Alignment:
| Q |
163 |
accaccatcgtgactggtccatcaccactcacgttgcgagaaaccataacctc |
215 |
Q |
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| T |
27170111 |
accaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc |
27170059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 18697029 - 18697085
Alignment:
| Q |
159 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaccataacctc |
215 |
Q |
| |
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|||||||||||||||||||| ||||||||||| | |||||| | || ||||||||| |
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|
| T |
18697029 |
catcaccaccatcgtgactgatccatcaccacctatgttgcgggcaaacataacctc |
18697085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 1551624 - 1551571
Alignment:
| Q |
159 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaccataac |
212 |
Q |
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| T |
1551624 |
catcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataac |
1551571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 17281970 - 17281887
Alignment:
| Q |
159 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaccataacctc-------accaagagagaaaacaaatc |
235 |
Q |
| |
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|||||||||||| ||||||| ||||||||||| | |||||||| || ||||||||| |||||||||||||||||||| |
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|
| T |
17281970 |
catcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatc |
17281887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 10408921 - 10408977
Alignment:
| Q |
159 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaccataacctc |
215 |
Q |
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|||||||||||||||||| | ||||||||||| | |||||||| || ||||||||| |
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| T |
10408921 |
catcaccaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctc |
10408977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 34118068 - 34118124
Alignment:
| Q |
159 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaccataacctc |
215 |
Q |
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|||||||||||||||||| | ||||||||||| | |||||||| || ||||||||| |
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|
| T |
34118068 |
catcaccaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctc |
34118124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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