View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0359_low_2 (Length: 745)

Name: NF0359_low_2
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0359_low_2
NF0359_low_2
[»] chr6 (5 HSPs)
chr6 (471-648)||(637557-637736)
chr6 (5-184)||(15359374-15359547)
chr6 (234-321)||(15358814-15358901)
chr6 (182-216)||(15359066-15359100)
chr6 (386-426)||(636998-637038)
[»] scaffold0576 (3 HSPs)
scaffold0576 (14-184)||(4358-4522)
scaffold0576 (234-321)||(3781-3868)
scaffold0576 (182-216)||(4050-4084)
[»] chr8 (3 HSPs)
chr8 (5-184)||(3733907-3734080)
chr8 (234-321)||(3733347-3733434)
chr8 (182-216)||(3733599-3733633)
[»] chr7 (3 HSPs)
chr7 (5-184)||(2752015-2752188)
chr7 (234-321)||(2752661-2752748)
chr7 (182-216)||(2752462-2752496)
[»] chr1 (3 HSPs)
chr1 (5-184)||(20264622-20264796)
chr1 (234-321)||(20264047-20264134)
chr1 (182-216)||(20264314-20264348)
[»] chr2 (3 HSPs)
chr2 (5-184)||(28658454-28658628)
chr2 (234-321)||(28657879-28657966)
chr2 (182-216)||(28658146-28658180)
[»] chr4 (2 HSPs)
chr4 (573-648)||(30254883-30254958)
chr4 (14-120)||(18198819-18198927)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-120)||(288870-288978)
[»] chr5 (1 HSPs)
chr5 (386-426)||(5525011-5525051)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 1e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 471 - 648
Target Start/End: Original strand, 637557 - 637736
Alignment:
Q  471 acatttagaaagtgaattcattttttagtggcacttcacttgatataaatcaaaaggtatgaacaaaaatgnnnnnnnnnctgaattgaatcaacacaa- 569  Q
    ||||||||||| |||||||||||||| |||||||||||| | |||||||||| |||||||||| |||||||         |||||||||||||||||||     
T  637557 acatttagaaaatgaattcatttttttgtggcacttcacctaatataaatcacaaggtatgaataaaaatgaaacaaaaactgaattgaatcaacacaaa 637656  T
Q  570 -ctaaattgaaacaaaattagacttacacttgttgtgattgtaaggccctcttgaacacttcacctgagatttaaacaaa 648  Q
     |||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  637657 actaaattgaagcaaaattagacttacatttgttgtgattgtaaggcccttttgaacacttcacctgagatttaaacaaa 637736  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 15359547 - 15359374
Alignment:
Q  5 aagagagggtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 104  Q
    |||||||  |||| ||||||||||||||||||||||||||  ||||||| |||||| ||||  |||       ||  |||| ||||||||| ||||||||    
T  15359547 aagagagtatgaagcttactttgaagatctctgcaacaacgattacaactgaaataatgtc--atc-------tctgaaacgagacaatgggtatttcaa 15359457  T
Q  105 ggagttaattatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 184  Q
    ||||||||||||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  15359456 ggagttaattatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 15359374  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 15358901 - 15358814
Alignment:
Q  234 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 321  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||||    
T  15358901 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaacaa 15358814  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 15359100 - 15359066
Alignment:
Q  182 gaaaaagaaaagaataacattctaacctctccaat 216  Q
    |||||||||||||||||||||||||||||||||||    
T  15359100 gaaaaagaaaagaataacattctaacctctccaat 15359066  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 636998 - 637038
Alignment:
Q  386 ctataacaaaataatcattgaaccattaatctcaaatctaa 426  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  636998 ctataacaaaataatcattcagccattaatctcaaatctaa 637038  T

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Target: scaffold0576 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 4522 - 4358
Alignment:
Q  14 tgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagttaat 113  Q
    |||| ||||||||||||||||||||||||||  ||||||| |||||||||||  |||       ||  |||| ||||||||| |||||||||||||||||    
T  4522 tgaagcttactttgaagatctctgcaacaacgattacaactgaaatagtgtc--atc-------tctgaaacgagacaatgggtatttcaaggagttaat 4432  T
Q  114 tatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 184  Q
    |||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  4431 tatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 4358  T

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Target: scaffold0576; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 3868 - 3781
Alignment:
Q  234 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 321  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||||    
T  3868 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaacaa 3781  T

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Target: scaffold0576; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 4084 - 4050
Alignment:
Q  182 gaaaaagaaaagaataacattctaacctctccaat 216  Q
    |||||||||||||||||||||||||||||||||||    
T  4084 gaaaaagaaaagaataacattctaacctctccaat 4050  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 3734080 - 3733907
Alignment:
Q  5 aagagagggtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 104  Q
    |||||||  |||| ||||||||||||||||||||||||||  ||||||| |||||| ||||  |||       ||  |||| ||||||||| ||||||||    
T  3734080 aagagagtatgaagcttactttgaagatctctgcaacaacgattacaactgaaataatgtc--atc-------tctgaaacgagacaatgggtatttcaa 3733990  T
Q  105 ggagttaattatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 184  Q
    ||||||||||||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  3733989 ggagttaattatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 3733907  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 3733434 - 3733347
Alignment:
Q  234 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 321  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||||    
T  3733434 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaacaa 3733347  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 3733633 - 3733599
Alignment:
Q  182 gaaaaagaaaagaataacattctaacctctccaat 216  Q
    |||||||||||||||||||||||||||||||||||    
T  3733633 gaaaaagaaaagaataacattctaacctctccaat 3733599  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 2752015 - 2752188
Alignment:
Q  5 aagagagggtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 104  Q
    |||||||  |||| ||||||||||||||||||||||||||  ||||||| |||||| ||||  |||       ||  |||| ||||||||| ||||||||    
T  2752015 aagagagtatgaagcttactttgaagatctctgcaacaacgattacaactgaaataatgtc--atc-------tctgaaacgagacaatgggtatttcaa 2752105  T
Q  105 ggagttaattatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 184  Q
    ||||||||||||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  2752106 ggagttaattatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 2752188  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 2752661 - 2752748
Alignment:
Q  234 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 321  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||||    
T  2752661 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaacaa 2752748  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 2752462 - 2752496
Alignment:
Q  182 gaaaaagaaaagaataacattctaacctctccaat 216  Q
    |||||||||||||||||||||||||||||||||||    
T  2752462 gaaaaagaaaagaataacattctaacctctccaat 2752496  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 20264796 - 20264622
Alignment:
Q  5 aagagagggtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 104  Q
    |||||||  |||| |||||||||||||||||||||||||   ||||||| ||||||||||| | ||| |         ||| ||||||||| ||||||||    
T  20264796 aagagagtatgaagcttactttgaagatctctgcaacaatgattacaactgaaatagtgtcatctccga---------aacgagacaatgggtatttcaa 20264706  T
Q  105 ggagttaattatag-aaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 184  Q
    |||||||||||||| ||||  ||||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  20264705 ggagttaattatagaaaaaaatgagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 20264622  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 20264134 - 20264047
Alignment:
Q  234 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 321  Q
    |||||||||||||| ||||||||||| |||||||||  |||| ||||||||||||||| || |||||||| | ||| |||||||||||    
T  20264134 tattaataaaaacagaactcgataatagatttagctcccttacaaagattaagaacccacacaaaggttataagaacagtcccaacaa 20264047  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 20264348 - 20264314
Alignment:
Q  182 gaaaaagaaaagaataacattctaacctctccaat 216  Q
    |||||||||||||||||||||||||||||||||||    
T  20264348 gaaaaagaaaagaataacattctaacctctccaat 20264314  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 28658628 - 28658454
Alignment:
Q  5 aagagagggtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 104  Q
    |||||||  |||| |||||||||||||||||||||||||   ||||||| |||||||||||  |||       ||  |||| ||||||||  ||||||||    
T  28658628 aagagagtatgaagcttactttgaagatctctgcaacaatgattacaactgaaatagtgtc--atc-------tctgaaacgagacaatgagtatttcaa 28658538  T
Q  105 ggagttaattatag-aaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 184  Q
    |||||||||||||| ||||  ||||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  28658537 ggagttaattatagaaaaaaatgagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 28658454  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 28657966 - 28657879
Alignment:
Q  234 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 321  Q
    |||||||||||||| ||||||||||| |||||||||  |||| ||||||||||||||| || |||||||| | ||| |||||||||||    
T  28657966 tattaataaaaacagaactcgataatagatttagctcccttacaaagattaagaacccacacaaaggttataagaacagtcccaacaa 28657879  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 28658180 - 28658146
Alignment:
Q  182 gaaaaagaaaagaataacattctaacctctccaat 216  Q
    |||||||||||||||||||||||||||||||||||    
T  28658180 gaaaaagaaaagaataacattctaacctctccaat 28658146  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 573 - 648
Target Start/End: Original strand, 30254883 - 30254958
Alignment:
Q  573 aattgaaacaaaattagacttacacttgttgtgattgtaaggccctcttgaacacttcacctgagatttaaacaaa 648  Q
    |||||||  ||||| ||||||||||||| ||||||||||| | ||||||||  || ||||||||||||||||||||    
T  30254883 aattgaagtaaaatcagacttacacttggtgtgattgtaaaggcctcttgagtacatcacctgagatttaaacaaa 30254958  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 18198927 - 18198819
Alignment:
Q  14 tgaaacttacttt--gaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagtta 111  Q
    |||||||||||||  |||||||| || ||| | | |||| |||||||||||||| | ||||||| |||  |||  ||||||||| ||||||||||| |||    
T  18198927 tgaaacttactttttgaagatctttgtaactaaaattactacagaaatagtgtcatctccaagtcatctgaaatgagacaatgggtatttcaaggactta 18198828  T
Q  112 attatagaa 120  Q
    |||||||||    
T  18198827 attatagaa 18198819  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 288870 - 288978
Alignment:
Q  14 tgaaacttacttt--gaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagtta 111  Q
    |||||||||||||  |||||||| || ||| | | |||| |||||||||||||| | ||||||| |||  |||  ||||||||| ||||||||||| |||    
T  288870 tgaaacttactttttgaagatctttgtaactaaaattactacagaaatagtgtcatctccaagtcatctgaaatgagacaatgggtatttcaaggactta 288969  T
Q  112 attatagaa 120  Q
    |||||||||    
T  288970 attatagaa 288978  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 426
Target Start/End: Complemental strand, 5525051 - 5525011
Alignment:
Q  386 ctataacaaaataatcattgaaccattaatctcaaatctaa 426  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  5525051 ctataacaaaataaacattcaaccattaatctcaaatctaa 5525011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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