View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359_low_22 (Length: 274)
Name: NF0359_low_22
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 1139217 - 1139448
Alignment:
| Q |
16 |
ctccaatactattatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataacct |
115 |
Q |
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| T |
1139217 |
ctccaatactactatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataacct |
1139316 |
T |
|
| Q |
116 |
tacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgatt |
215 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139317 |
tacttcaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgatt |
1139416 |
T |
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| Q |
216 |
cataaaactccatttaaacaaacaccaaaggt |
247 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1139417 |
cataaaactccatttaaacaaacaccaaaggt |
1139448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 1136009 - 1136237
Alignment:
| Q |
16 |
ctccaatactattatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataacct |
115 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
1136009 |
ctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatttctatcaaacaaaattgtccggcta---ctcataacct |
1136105 |
T |
|
| Q |
116 |
tacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgatt |
215 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136106 |
tacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaattattttggagagcttcattggctcctatgatt |
1136205 |
T |
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| Q |
216 |
cataaaactccatttaaacaaacaccaaaggt |
247 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
1136206 |
cataaaactccatttaaacaaacaccaaaggt |
1136237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 54479475 - 54479289
Alignment:
| Q |
61 |
ataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataaccttacttaaaatggattggaagaattattaaagattcctaaggctat |
160 |
Q |
| |
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|||||||||| ||||||||||||||| || |||| | || | ||||| |||||||||||| | |||| ||| |||| || || |||||||||| |||||| |
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| T |
54479475 |
ataaccaaacaaatatttctatcaaaaaatattgcttggttgttactaataaccttacttcacatgggttgaaagacttgttgaagattcctatggctat |
54479376 |
T |
|
| Q |
161 |
gcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggt |
247 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
54479375 |
gcatgacatgaatgaggatgaattgttttggagagcttcattggaacctatgattcataaaactccattcaaacaaacaccaaaggt |
54479289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 31269290 - 31269158
Alignment:
| Q |
115 |
ttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgat |
214 |
Q |
| |
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|||||| |||||| ||||| ||||| || |||||||| | |||||||||||| |||||||| || |||||||||||||||||||| || ||||||||| |
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| T |
31269290 |
ttacttcaaatgggttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgat |
31269191 |
T |
|
| Q |
215 |
tcataaaactccatttaaacaaacaccaaaggt |
247 |
Q |
| |
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||||||| ||||||| ||||||| ||||||||| |
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| T |
31269190 |
tcataaacctccattcaaacaaataccaaaggt |
31269158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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