View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0359_low_24 (Length: 270)

Name: NF0359_low_24
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0359_low_24
NF0359_low_24
[»] chr1 (6 HSPs)
chr1 (31-243)||(10396734-10396946)
chr1 (31-243)||(10406954-10407166)
chr1 (57-191)||(10381345-10381479)
chr1 (146-240)||(10429132-10429226)
chr1 (10-53)||(10396687-10396730)
chr1 (10-53)||(10406907-10406950)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 10396734 - 10396946
Alignment:
Q  31 ttattctgcaaacacatcaaattattattttaaaatgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatg 130  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10396734 ttattctgcaaacacatcaaattattattttatattgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatg 10396833  T
Q  131 cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10396834 cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa 10396933  T
Q  231 attgcacattctt 243  Q
    |||||||||||||    
T  10396934 attgcacattctt 10396946  T

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Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 10406954 - 10407166
Alignment:
Q  31 ttattctgcaaacacatcaaattattattttaaaatgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatg 130  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10406954 ttattctgcaaacacatcaaattattattttatattgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatt 10407053  T
Q  131 cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10407054 cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa 10407153  T
Q  231 attgcacattctt 243  Q
    |||||||||||||    
T  10407154 attgcacattctt 10407166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 10381345 - 10381479
Alignment:
Q  57 attttaaaatgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatgcataatccaattagtaacacaatgct 156  Q
    |||| ||||| |||||||||||||| ||||||||||| |||||||| ||||  | ||||| |||||  ||| ||||||| |||   || |||||| || |    
T  10381345 atttgaaaatatgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgtt 10381444  T
Q  157 catggaaaacatgcatgcacttggtacgaacaatg 191  Q
     ||||||||||||||||||||||||||||||||||    
T  10381445 gatggaaaacatgcatgcacttggtacgaacaatg 10381479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 10429132 - 10429226
Alignment:
Q  146 aacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaaattgcacatt 240  Q
    ||||||||| ||||| |||| |||||| ||||||||||||| |||||||  | |||||||||||  ||||||||||||||||||||||| |||||    
T  10429132 aacacaatgttcatgaaaaaaatgcatacacttggtacgaataatgtgtggtacttctgatccatcacaaaattcctccaaacaaattgaacatt 10429226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 10396687 - 10396730
Alignment:
Q  10 attattctggactaaattcctttattctgcaaacacatcaaatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10396687 attattctggactaaattcctttattctgcaaacacatcaaatt 10396730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 10406907 - 10406950
Alignment:
Q  10 attattctggactaaattcctttattctgcaaacacatcaaatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10406907 attattctggactaaattcctttattctgcaaacacatcaaatt 10406950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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