View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359_low_25 (Length: 268)
Name: NF0359_low_25
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 1837141 - 1836938
Alignment:
| Q |
27 |
agcataggaaatagatagaccgtaataaatcctttatcaaattaatcattcccactgtgtgagaaagatagaatcagttggttgttaatactcaggttgg |
126 |
Q |
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| T |
1837141 |
agcataggaaatagatagaccgtaataaatcctttatcaaattaatcattcccactgtgtgagaaagatagaatcagttggttgttaatactcaggttgg |
1837042 |
T |
|
| Q |
127 |
gttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcnnnnnnncatagtcagtatatacggtggaatgttgat |
226 |
Q |
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| T |
1837041 |
gttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcaaaaaaacatagtcagtatatacggtggaatgttgat |
1836942 |
T |
|
| Q |
227 |
gatg |
230 |
Q |
| |
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|||| |
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| T |
1836941 |
gatg |
1836938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 41384789 - 41384993
Alignment:
| Q |
27 |
agcataggaaatagatagaccgtaataaatcctttatcaaattaatcattcccact----------gtgtgagaaagatagaatcagtt--ggttgttaa |
114 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||| ||| | ||| | || |||| |||| |
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| T |
41384789 |
agcataggaaatagagagactgtaataaatcctttatcaaattaatcattcccattttgtttgtgtgtgtgagagagaaataatgaattttggttcttaa |
41384888 |
T |
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| Q |
115 |
tactcaggttgggttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcnnnnnnncatagtcagtatatacgg |
214 |
Q |
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|| |||||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41384889 |
tattcaggttgggttcatgatgg-aagtcagttaagggaa---gaagaaggaaaatatgacactttgaatgcttcagaataaaatagtcagtatatacgg |
41384984 |
T |
|
| Q |
215 |
tggaatgtt |
223 |
Q |
| |
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||||||||| |
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| T |
41384985 |
tggaatgtt |
41384993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 18640288 - 18640491
Alignment:
| Q |
27 |
agcataggaaatagatagaccgtaataaatcctttatcaaattaatcattcccactgtgtgagaaagatagaatcagttggttgttaatactcaggttgg |
126 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18640288 |
agcagaggaaatagatagaacgtaataaatcctttatcaaattaatcattcccactgtgtgagaaagatagaatcagttggttgttaatactcaggttgg |
18640387 |
T |
|
| Q |
127 |
gttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcnnnnnnncatagtcagtatatacggtggaatgttgat |
226 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
18640388 |
gttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcaaaaaaacatagtcagtatatacggtggaatattgat |
18640487 |
T |
|
| Q |
227 |
gatg |
230 |
Q |
| |
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|||| |
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|
| T |
18640488 |
gatg |
18640491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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