View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0359_low_27 (Length: 253)
Name: NF0359_low_27
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 41957620 - 41957397
Alignment:
| Q |
1 |
caccgacgctgaaaacaagcgtattttaccacacattctagattgcaatacattgaacacaagccttgattcatcctccgggaagctgtacgcgacgcgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41957620 |
caccgacgctgaaaacaagcgtgttttaccacacattctagattgcaatacattgaacacaagccttgattcatcctccgggaagctgtacgcgacgcgc |
41957521 |
T |
|
| Q |
101 |
gctataaccgttcgttgtccgtggctggtacgaaggattatcggtgaagatatttgtcattgtgttgaatcaacagttgtggatgcaaattcgcgttcga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41957520 |
gctataaccgttcgttgtccgtggctggtgcgaaggattatcggtgaagacatttgtcattgtgttgaatcaacagttgtggatgcaaaatcgcgttcga |
41957421 |
T |
|
| Q |
201 |
tgcagatttgttataggaatatta |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41957420 |
tgcagatttgttataggaatatta |
41957397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5598690 - 5598467
Alignment:
| Q |
1 |
caccgacgctgaaaacaagcgtattttaccacacattctagattgcaatacattgaacacaagccttgattcatcctccgggaagctgtacgcgacgcgc |
100 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5598690 |
caccgaagctgaaaacaagcgtgttttaccacacattctagattgcaatacattgaacaccagccttgattcatcctccgggaagctgtacgctacgcgc |
5598591 |
T |
|
| Q |
101 |
gctataaccgttcgttgtccgtggctggtacgaaggattatcggtgaagatatttgtcattgtgttgaatcaacagttgtggatgcaaattcgcgttcga |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||| |
|
|
| T |
5598590 |
gcgataaccgttcgttgtccgtggctggtacgtaggattatcggtgaagacatttgtcattgtgttgaatcaacaattgtggatgcaaaattgcgttcga |
5598491 |
T |
|
| Q |
201 |
tgcagatttgttataggaatatta |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5598490 |
tgcagatttgttataggaatatta |
5598467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 25548611 - 25548388
Alignment:
| Q |
1 |
caccgacgctgaaaacaagcgtattttaccacacattctagattgcaatacattgaacacaagccttgattcatcctccgggaagctgtacgcgacgcgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25548611 |
caccgacgctgaaaacaagcgtgttttaccacacattctagattgcaatacattgaacacaagccttgattcatcctccgggaagctgtacgcgacgcgc |
25548512 |
T |
|
| Q |
101 |
gctataaccgttcgttgtccgtggctggtacgaaggattatcggtgaagatatttgtcattgtgttgaatcaacagttgtggatgcaaattcgcgttcga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25548511 |
gctataaccgttcgttgtccgtggctggttcgaaggattatcggtgaagacatttgtcattgtgttgaatcaacagttgtggatgcaaaatcgcgttcga |
25548412 |
T |
|
| Q |
201 |
tgcagatttgttataggaatatta |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
25548411 |
tgcagatttgttataggaatatta |
25548388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40636933 - 40636710
Alignment:
| Q |
1 |
caccgacgctgaaaacaagcgtattttaccacacattctagattgcaatacattgaacacaagccttgattcatcctccgggaagctgtacgcgacgcgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40636933 |
caccgacgctgaaaacaagcgtgttttaccacacattctagattgcaatacattgaacacaagccttgattcatcctccgggaagctgtacgcgacgcgc |
40636834 |
T |
|
| Q |
101 |
gctataaccgttcgttgtccgtggctggtacgaaggattatcggtgaagatatttgtcattgtgttgaatcaacagttgtggatgcaaattcgcgttcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40636833 |
gctataaccgttcgttgtccgtggctggtacgaaggattatcggagaagacatttgtcattgtgttgaatcaacagttgtggatgcaaaatcgcgttcga |
40636734 |
T |
|
| Q |
201 |
tgcagatttgttataggaatatta |
224 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
40636733 |
tgcagatttgttataggaaaatta |
40636710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1765 times since January 2019
Visitors: 3091