View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0359_low_3 (Length: 705)
Name: NF0359_low_3
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 602; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 66 - 695
Target Start/End: Complemental strand, 1347359 - 1346730
Alignment:
| Q |
66 |
tgtccatatttcttgcattcatgacactgctttattttgcacagagccattacctcttgttccattgcttgagttagttctacctctgaactttttccct |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1347359 |
tgtccatatttcttgcattcatgacactgctttattttgcacagagccattacctctagttccattgcttgagttagttctacctctgaacttttgccct |
1347260 |
T |
|
| Q |
166 |
ctttagttttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347259 |
ctttagttttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctt |
1347160 |
T |
|
| Q |
266 |
tcattcgcatttcatgtgactccaaggatgcttgcatatcattcaaggtctttgagataagatctttttgactcttgaattgcttctatgacgtaattga |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347159 |
tcattcgcatttcatgtgactccaaggatgcttgcaaatcattcaaggtctttgagataagatctttttgactcttgaattgcttctatgacgtaattga |
1347060 |
T |
|
| Q |
366 |
ttcatctcgttagtgtatacacaattttcttcatgacttgtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatg |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347059 |
ttcatctcgttagtgtatacacaattttcttcatgacttgtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatg |
1346960 |
T |
|
| Q |
466 |
aatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgttaaattggatctgcttcatatgttttgagcata |
565 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1346959 |
aatactttcatctttgcaaaattcaatcagctcaaattcttgttttaagccttgtaacctttttcgttaaattggatctgcttcatatgttttgagcata |
1346860 |
T |
|
| Q |
566 |
tttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaacaaagctttttagtttgggag |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1346859 |
tttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcatattgacttattaaaaacaaagctttttagtttgggag |
1346760 |
T |
|
| Q |
666 |
tggattagcagaatctttgtttggtctgtg |
695 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
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|
| T |
1346759 |
tggattagcagaatctttgtttggtttgtg |
1346730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 290
Target Start/End: Original strand, 8675805 - 8675916
Alignment:
| Q |
178 |
ggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctttcattcgcattt |
277 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |||||||||||| || || ||| | ||||||||||||||| |||||| ||||| ||||| |
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|
| T |
8675805 |
ggtctaccttcctttacacaaatcccttatttgtcagatttgttggagctgtaaatgtttgttcgattgtgtcacttga-cctttcactcattaacattt |
8675903 |
T |
|
| Q |
278 |
catgtgactccaa |
290 |
Q |
| |
|
|||| |||||||| |
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|
| T |
8675904 |
catgcgactccaa |
8675916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 404
Target Start/End: Original strand, 19807579 - 19807748
Alignment:
| Q |
233 |
tgcttgattgattgtgtcacttgaccctttctttcattcgcatttcatgtgactccaaggatgcttgcatatcattcaaggtctttgagataagatcttt |
332 |
Q |
| |
|
|||||||| |||||||||||||||| |||| | ||| ||||||||||||||| ||||| || ||||| ||||||| ||||| || | | |||||||| |
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|
| T |
19807579 |
tgcttgatcgattgtgtcacttgact-tttcacttatttgcatttcatgtgactgcaagggtgattgcaaatcattctaggtcgctgtgttcagatcttt |
19807677 |
T |
|
| Q |
333 |
ttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattttcttcatgactt |
404 |
Q |
| |
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| ||||||| ||||||| ||| ||||||||| ||| || |||||||| ||||||||||| |||||||| |
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| T |
19807678 |
t-gactcttcaattgctgctaatgcgtaattgaatcagcttgttagtgttagcacaattttctccatgactt |
19807748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 9619569 - 9619623
Alignment:
| Q |
174 |
ttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagctt |
228 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||||||||| |||| |||||||| |
|
|
| T |
9619569 |
ttgcggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagctt |
9619623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 548 - 653
Target Start/End: Complemental strand, 19653021 - 19652915
Alignment:
| Q |
548 |
tcatatgttttgagcata-tttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaaca |
646 |
Q |
| |
|
|||||||||||| ||||| ||| |||| || |||||||||||||||||||| | || |||| |||| ||| || ||| |||||||||||| |||||| |
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| T |
19653021 |
tcatatgttttgtgcataattttccaagtttcatttgttgttatagcatggaattttttctcaagatctggtatctgctcatattgacttatttaaaaca |
19652922 |
T |
|
| Q |
647 |
aagcttt |
653 |
Q |
| |
|
||||||| |
|
|
| T |
19652921 |
aagcttt |
19652915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 547
Target Start/End: Original strand, 19807813 - 19807927
Alignment:
| Q |
436 |
gaccaacgtatccattcgtaaaaaatcatga---atactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgt |
532 |
Q |
| |
|
||||||| | ||||||||| |||||| |||| |||||||||| |||| || |||||||| |||||||| | ||||||||| |||||||| | ||| |
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| T |
19807813 |
gaccaacttgtccattcgtgaaaaataatgacaaatactttcatctttgaaatgttcaatcaactcaaattgtctttttaagccacgcaaccttgtccgt |
19807912 |
T |
|
| Q |
533 |
taaattggatctgct |
547 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
19807913 |
tatgttggatctgct |
19807927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 419 - 597
Target Start/End: Original strand, 40036781 - 40036960
Alignment:
| Q |
419 |
ttattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagcctt |
518 |
Q |
| |
|
|||||||| | || |||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||||| ||| |
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|
| T |
40036781 |
ttattcttggttttattgaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtctt |
40036880 |
T |
|
| Q |
519 |
gcaacctttttcgttaaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgttatagcatgg |
597 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||||||||| ||||||||| |||| ||| |||||||||||||| |
|
|
| T |
40036881 |
gcaacctttttcgttaaattggatttgctccatgtgttttgagcataatttcccaagcttgttttattgttatagcatgg |
40036960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 331 - 602
Target Start/End: Original strand, 40031340 - 40031623
Alignment:
| Q |
331 |
ttttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattttcttcatgacttgtttttctgttatatta--------- |
421 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||| |||||| | |||||| | || ||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
40031340 |
ttttgactcttgagatgctgctatggcgtaattgaatcatcttgatagtgtttgcataatcttctccatgacttgtttttctgttgtattaccattgtta |
40031439 |
T |
|
| Q |
422 |
ttcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgca |
521 |
Q |
| |
|
||||||| || ||||||||| ||||| ||| ||||||||||| ||||| ||| || |||| |||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
40031440 |
ttcttcggtttattgaccaatgtatctatttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtcttgca |
40031539 |
T |
|
| Q |
522 |
acctttttcgttaaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgt--tatagcatggaaact |
602 |
Q |
| |
|
||||||||| ||||| ||||| |||| ||| |||||||||||| ||||||||| ||||||||| | | ||||||||||||||| |
|
|
| T |
40031540 |
acctttttctttaaactggatttgctccatgtgttttgagcataatttcccaagcttgctttgctattatatagcatggaaact |
40031623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 287
Target Start/End: Complemental strand, 32241253 - 32241112
Alignment:
| Q |
144 |
tctacctctgaactttttccctctttagttttgcggtctaccttcctttgcacaaatccctaatttgtcag-ttttgttggagcttgaagtgcttgattg |
242 |
Q |
| |
|
||||||||| || |||| |||||||| ||| | |||||||| |||||||||||||||||| || |||||| ||||| ||||||| || || ||| | | |
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|
| T |
32241253 |
tctacctctaaagttttgccctctttggtt--gaggtctaccatcctttgcacaaatccctcatctgtcagattttgaaggagctttaaatgtttggtcg |
32241156 |
T |
|
| Q |
243 |
attgtgtcacttgaccctttctttcattcgcatttcatgtgactc |
287 |
Q |
| |
|
||| ||||||| || |||||| |||||| ||||||||||||||| |
|
|
| T |
32241155 |
attatgtcactcga-cctttcactcattcacatttcatgtgactc |
32241112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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