View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359_low_30 (Length: 244)
Name: NF0359_low_30
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 36312890 - 36312745
Alignment:
| Q |
1 |
ctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctg |
100 |
Q |
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| T |
36312890 |
ctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctg |
36312791 |
T |
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| Q |
101 |
ataaatcacctgaaggtttgttggagaaagtaactgctgatgatgt |
146 |
Q |
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| T |
36312790 |
ataaatcacctgaaggtttgttggagaaagtaactgctgatgatgt |
36312745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 36290407 - 36290262
Alignment:
| Q |
1 |
ctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctg |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| || | |
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| T |
36290407 |
ctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccg |
36290308 |
T |
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| Q |
101 |
ataaatcacctgaaggtttgttggagaaagtaactgctgatgatgt |
146 |
Q |
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| T |
36290307 |
ataaatctcctgaaggattgttggagaaggttaccgctgatgatgt |
36290262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 33579821 - 33579676
Alignment:
| Q |
1 |
ctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctg |
100 |
Q |
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|||||||||||| ||||||| |||||||||||| | ||||||||| | | ||||||||||||||||||||| || | |||| | |||||||| |
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| T |
33579821 |
ctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactggtttgaggtcacttgctgctacttcaaaggctc |
33579722 |
T |
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| Q |
101 |
ataaatcacctgaaggtttgttggagaaagtaactgctgatgatgt |
146 |
Q |
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| T |
33579721 |
ataaatctcttgaaggattgtttgagaaagttactgctgatgatgt |
33579676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 15997177 - 15997322
Alignment:
| Q |
1 |
ctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctg |
100 |
Q |
| |
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|||||||||||| ||||||| |||||||||||| | ||||||||| | | ||||||||||||| ||||||| || | |||| | |||||||| |
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| T |
15997177 |
ctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactgatttgaggtcacttgctgctacttcaaaggctc |
15997276 |
T |
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| Q |
101 |
ataaatcacctgaaggtttgttggagaaagtaactgctgatgatgt |
146 |
Q |
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||||||| | |||||| ||||| |||||||| |||||||||||||| |
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| T |
15997277 |
ataaatctcttgaaggattgtttgagaaagttactgctgatgatgt |
15997322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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